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FASTA file with windows line-ending get read wrongly in the linux version.
Reading the same FASTA file in the Windows version and Linux version resulted in less proteins.
Windows:
```
[0:00] L…
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I'm fairly certain a good number of these exist in STRING and I think it would be a very helpful annotation on embedding visualizations (i.e. it would be good context to know which clusters are differ…
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hi pyAscore team.
I have a problem that my mass spectrometry data had two modifications to K, and when I submitted the code, the following example spectral data data seemed to be wrong. , and two K m…
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Hi,
I am running the example data with the following command.
`braker.pl --genome genome.fa --prot_seq proteins.fa --prg gth --bam RNAseq.bam --gth2traingenes --softmasking --cores 22 --UTR=on -…
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I just [archived](https://web.archive.org/web/20180401223224/https://tools.wmflabs.org/scholia/work/) the [landing page for the work aspect](https://tools.wmflabs.org/scholia/work/).
There, we curr…
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**Is your feature request related to a problem? Please describe.**
Please provide documentation on the submission for GlycoProteins for 3D structure generation. The input would be a PDB ID for the pr…
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I hope I'm not missing something silly here. I'm seeing these two results for the same peptide for two different scans:
```
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Hi everyone,
On the website, we can input a modifier (eg: `>` or `
g123k updated
7 months ago
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I am using DreamAI to impute missing values in a TMT proteomics dataset. The experiment was performed with 10 batches of TMTpro (16-plex), each batch with one reference channel. I have 3139 proteins.
…
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Hello!
I´ve been using Chromatiblock, and have managed to produce apparently correct visualizations. I´ve tried adding a protein list containing various aminoacid sequences for annotation using -g…