Villen-Lab pyAscore issues

Villen-Lab / pyAscore

A python package for fast post translational modification localization, powered by Cython.

https://pyascore.readthedocs.io/

MIT License

18 stars 5 forks source link

issues

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mass cannot be matched

#52 YoujiaMa opened 6 months ago
1
removed queue_size parameter from PercolatorTXT() call in id_parsers.py

#51 EnriMassi closed 11 months ago
1
PercolatorTXT 'queue_size' argument

#50 EnriMassi closed 11 months ago
0
Upgrade publish github runners and add mac publish

#49 AnthonyOfSeattle closed 1 year ago
0
Mac compile + fix relating to use of pyteomics with MacOS + mac-build.yml

#48 freejstone closed 1 year ago
3
unittest errors relating to pyteomics

#47 freejstone closed 1 year ago
2
Compiling with mac

#46 freejstone closed 1 year ago
4
Enable peptide score for all peptides regardless of the modification state

#45 AnthonyOfSeattle closed 1 year ago
0
Update links in docs

#44 AnthonyOfSeattle closed 1 year ago
0
Explicitly set ubuntu github runners to 20.04

#43 AnthonyOfSeattle closed 2 years ago
0
Linux version needs to be set for github runners

#42 AnthonyOfSeattle opened 2 years ago
1
Get Peptide Scores for all peptides

#41 FloBay closed 1 year ago
6
Allow to calculate Peptide Score for unambiguous psms

#40 FloBay closed 1 year ago
6
Raise minimum numpy version to avoid binary incompatibility

#39 AnthonyOfSeattle opened 2 years ago
0
Fix numpy binary incompatability

#38 AnthonyOfSeattle opened 2 years ago
1
Extra PTMs and Unimod

#37 ypriverol opened 2 years ago
0
Incorrect calculation of score for narrow spectra bins.

#36 AnthonyOfSeattle opened 2 years ago
0
Modernize pyascore package

#35 AnthonyOfSeattle closed 2 years ago
0
Improve iterator

#34 AnthonyOfSeattle closed 2 years ago
0
Enhancements before publication

#33 AnthonyOfSeattle opened 2 years ago
0
Continue file reading fixes

#32 AnthonyOfSeattle closed 2 years ago
0
Reading mzIdentML from Comet

#31 AnthonyOfSeattle opened 2 years ago
0
Update PSM extraction from mzIdentML files

#30 AnthonyOfSeattle closed 2 years ago
0
Scan extraction from mzIdentML files is incorrect

#29 AnthonyOfSeattle closed 2 years ago
0
Allow passing constant mods

#28 AnthonyOfSeattle closed 2 years ago
0
Make variable mod counting smarter.

#27 AnthonyOfSeattle closed 2 years ago
0
Improve API documentation

#26 AnthonyOfSeattle closed 2 years ago
0
Add example workflows and output descrition to CLI page.

#25 AnthonyOfSeattle closed 2 years ago
0
Add z1 fragment

#24 AnthonyOfSeattle closed 2 years ago
0
Allow higher charge states in score calculations

#23 AnthonyOfSeattle closed 2 years ago
0
Allow terminal mods

#22 AnthonyOfSeattle closed 2 years ago
1
Add Windows compatibility.

#21 AnthonyOfSeattle closed 2 years ago
0
Update parser docs

#20 AnthonyOfSeattle closed 2 years ago
0
Build initial documentation

#19 AnthonyOfSeattle closed 2 years ago
0
Expand file types

#18 AnthonyOfSeattle closed 2 years ago
0
Check windows.

#17 AnthonyOfSeattle closed 2 years ago
0
Expand compatability

#16 AnthonyOfSeattle closed 2 years ago
0
Add fragment ions

#15 AnthonyOfSeattle closed 2 years ago
0
Add mzIdentML reading

#14 AnthonyOfSeattle closed 2 years ago
1
Fix discrepancies between code and docs

#13 AnthonyOfSeattle closed 2 years ago
0
Command line argument problems

#12 AnthonyOfSeattle closed 2 years ago
0
Add heavy lysine mod

#11 AnthonyOfSeattle closed 2 years ago
0
Error when number of scans in id file does not match spectra file

#10 AnthonyOfSeattle opened 2 years ago
0
tqdm missing as requirement

#9 AnthonyOfSeattle closed 2 years ago
0
Add github actions for unittests

#8 AnthonyOfSeattle closed 2 years ago
0
Add False Localization Rate Estimate

#7 AnthonyOfSeattle opened 2 years ago
0
Add Python API access to PepScores and Ambiguity scores

#6 AnthonyOfSeattle closed 3 years ago
0
Fix alternative site determination

#5 AnthonyOfSeattle closed 3 years ago
0
Extract ascores for all potential PTM sites

#4 RalfG closed 3 years ago
7
Neutral loss support

#3 AnthonyOfSeattle closed 3 years ago
0