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Villen-Lab
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pyAscore
A python package for fast post translational modification localization, powered by Cython.
https://pyascore.readthedocs.io/
MIT License
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mass cannot be matched
#52
YoujiaMa
opened
1 month ago
1
removed queue_size parameter from PercolatorTXT() call in id_parsers.py
#51
EnriMassi
closed
6 months ago
1
PercolatorTXT 'queue_size' argument
#50
EnriMassi
closed
6 months ago
0
Upgrade publish github runners and add mac publish
#49
AnthonyOfSeattle
closed
1 year ago
0
Mac compile + fix relating to use of pyteomics with MacOS + mac-build.yml
#48
freejstone
closed
1 year ago
3
unittest errors relating to pyteomics
#47
freejstone
closed
1 year ago
2
Compiling with mac
#46
freejstone
closed
1 year ago
4
Enable peptide score for all peptides regardless of the modification state
#45
AnthonyOfSeattle
closed
1 year ago
0
Update links in docs
#44
AnthonyOfSeattle
closed
1 year ago
0
Explicitly set ubuntu github runners to 20.04
#43
AnthonyOfSeattle
closed
1 year ago
0
Linux version needs to be set for github runners
#42
AnthonyOfSeattle
opened
1 year ago
1
Get Peptide Scores for all peptides
#41
FloBay
closed
1 year ago
6
Allow to calculate Peptide Score for unambiguous psms
#40
FloBay
closed
1 year ago
6
Raise minimum numpy version to avoid binary incompatibility
#39
AnthonyOfSeattle
opened
1 year ago
0
Fix numpy binary incompatability
#38
AnthonyOfSeattle
opened
1 year ago
1
Extra PTMs and Unimod
#37
ypriverol
opened
1 year ago
0
Incorrect calculation of score for narrow spectra bins.
#36
AnthonyOfSeattle
opened
2 years ago
0
Modernize pyascore package
#35
AnthonyOfSeattle
closed
2 years ago
0
Improve iterator
#34
AnthonyOfSeattle
closed
2 years ago
0
Enhancements before publication
#33
AnthonyOfSeattle
opened
2 years ago
0
Continue file reading fixes
#32
AnthonyOfSeattle
closed
2 years ago
0
Reading mzIdentML from Comet
#31
AnthonyOfSeattle
opened
2 years ago
0
Update PSM extraction from mzIdentML files
#30
AnthonyOfSeattle
closed
2 years ago
0
Scan extraction from mzIdentML files is incorrect
#29
AnthonyOfSeattle
closed
2 years ago
0
Allow passing constant mods
#28
AnthonyOfSeattle
closed
2 years ago
0
Make variable mod counting smarter.
#27
AnthonyOfSeattle
closed
2 years ago
0
Improve API documentation
#26
AnthonyOfSeattle
closed
2 years ago
0
Add example workflows and output descrition to CLI page.
#25
AnthonyOfSeattle
closed
2 years ago
0
Add z1 fragment
#24
AnthonyOfSeattle
closed
2 years ago
0
Allow higher charge states in score calculations
#23
AnthonyOfSeattle
closed
2 years ago
0
Allow terminal mods
#22
AnthonyOfSeattle
closed
2 years ago
1
Add Windows compatibility.
#21
AnthonyOfSeattle
closed
2 years ago
0
Update parser docs
#20
AnthonyOfSeattle
closed
2 years ago
0
Build initial documentation
#19
AnthonyOfSeattle
closed
2 years ago
0
Expand file types
#18
AnthonyOfSeattle
closed
2 years ago
0
Check windows.
#17
AnthonyOfSeattle
closed
2 years ago
0
Expand compatability
#16
AnthonyOfSeattle
closed
2 years ago
0
Add fragment ions
#15
AnthonyOfSeattle
closed
2 years ago
0
Add mzIdentML reading
#14
AnthonyOfSeattle
closed
2 years ago
1
Fix discrepancies between code and docs
#13
AnthonyOfSeattle
closed
2 years ago
0
Command line argument problems
#12
AnthonyOfSeattle
closed
2 years ago
0
Add heavy lysine mod
#11
AnthonyOfSeattle
closed
2 years ago
0
Error when number of scans in id file does not match spectra file
#10
AnthonyOfSeattle
opened
2 years ago
0
tqdm missing as requirement
#9
AnthonyOfSeattle
closed
2 years ago
0
Add github actions for unittests
#8
AnthonyOfSeattle
closed
2 years ago
0
Add False Localization Rate Estimate
#7
AnthonyOfSeattle
opened
2 years ago
0
Add Python API access to PepScores and Ambiguity scores
#6
AnthonyOfSeattle
closed
2 years ago
0
Fix alternative site determination
#5
AnthonyOfSeattle
closed
2 years ago
0
Extract ascores for all potential PTM sites
#4
RalfG
closed
2 years ago
7
Neutral loss support
#3
AnthonyOfSeattle
closed
3 years ago
0
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