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Dear Author,
I used doublet finder with just one sample using SCTransform paramSweep_v3, it reports error:
Error in NormalizeData.default(object = GetAssayData(object = object, : trying to get sl…
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Hi,
I've found questions posted previously that are similar to my question but don't provide the full picture that is specific to the approach I'm using, so I'm asking here to make sure my approac…
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Reminder: #1809 removes `expect_no_condition()` tests when outgesting `Seurat` objects from SOMA; this is due to a bug in `SeuratObject` that @mojaveazure is working on patching. He cannot submit to C…
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Hi,
I am trying to merge 17 seurat objects (scATAC data) as indicated in the _merging obejcts_ vignette (just without add.cell.ids) to do integration afterwards. But this needs a lot of time (proba…
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**Problem**: `FindMotifs` gives a (slightly cryptic) error message when run with only one feature
```r
library("Signac")
library("JASPAR2020")
library("TFBSTools")
library("BSge…
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Should be super easy. The harder part is to add Xenium toy dataset for unit testing.
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Hi Seurat team, @saketkc
#8153
I have two datasets, namely Vasc_1 and Vasc_2. Prior to integration, I employ the following code. The variable features obtained are very similar to my observati…
ghost updated
10 months ago
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Hello,
I am working on protein and transcriptome data from 3 experiments (9 patients). I pre processing, QC and filtering on all as per https://satijalab.org/seurat/articles/pbmc3k_tutorial.html.…
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currently uses two function calls but seems it could be streamlined
```
merge_process_emissions(make_object, ['opt', 'seurat'])
.map{merge_metadata_and_process_output(it)}
.dump(tag: 'seurat…
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Hi all,
I am working on GSE139107 & trying to merge the control & 2-day post IRI datasets. So far I have loaded both datasets in & made individual seurat objects labelled "Sham & IRI". I am trying …