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ChristopherBarrington
/
scamp
single cell analysis and more pipeline
https://christopherbarrington.github.io/scamp/
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Update resources.config
#146
ChristopherBarrington
closed
6 months ago
0
include reporting files
#145
ChristopherBarrington
closed
7 months ago
0
add mouse+human references
#144
ChristopherBarrington
opened
8 months ago
0
cell ranger multi count hash not the same
#143
ChristopherBarrington
opened
8 months ago
0
not all project types listed in guess parameters
#141
ChristopherBarrington
opened
8 months ago
1
use project path to guess scamp parameters
#140
ChristopherBarrington
opened
8 months ago
0
genome information
#139
ChristopherBarrington
opened
9 months ago
0
137 add genomes to guess parameters
#138
ChristopherBarrington
closed
9 months ago
0
add drososphila option to guess parameters
#137
ChristopherBarrington
closed
9 months ago
0
53 add cell ranger multi module and workflow
#136
ChristopherBarrington
closed
9 months ago
0
reorganise indexes
#135
ChristopherBarrington
opened
10 months ago
0
determine which cell ranger from project type
#134
ChristopherBarrington
opened
10 months ago
0
cell ranger multi and arc configs filenames
#133
ChristopherBarrington
opened
10 months ago
0
restructure cell ranger modules
#132
ChristopherBarrington
opened
10 months ago
1
add slurm parameters to config
#131
ChristopherBarrington
closed
9 months ago
1
rework guess parameters script
#130
ChristopherBarrington
opened
1 year ago
0
reorganise task.yaml and publish it
#129
ChristopherBarrington
closed
1 year ago
0
pipeline fails if fasta file or gtf file are not provided
#128
ChristopherBarrington
opened
1 year ago
0
provide example params for each workflow
#127
ChristopherBarrington
closed
9 months ago
0
use task.yaml to store all information
#126
ChristopherBarrington
closed
1 year ago
0
genome preparation publishes to a directory called null
#125
ChristopherBarrington
closed
1 year ago
0
Add cat file filter
#124
ChristopherBarrington
closed
1 year ago
0
update quickstart guide
#123
ChristopherBarrington
closed
1 year ago
0
rename stages to workflows
#122
ChristopherBarrington
closed
1 year ago
0
consistent channel dump options
#121
ChristopherBarrington
closed
1 year ago
0
fix cell ranger mkref editing gtf
#120
ChristopherBarrington
closed
1 year ago
0
cell ranger mkref edits a potentially linked file
#119
ChristopherBarrington
closed
1 year ago
0
make genome preparation stages run in parallel
#118
ChristopherBarrington
closed
1 year ago
0
check template for channel tags
#116
ChristopherBarrington
closed
1 year ago
0
stages should be workflows
#115
ChristopherBarrington
closed
1 year ago
0
Add quantified config example
#114
ChristopherBarrington
closed
1 year ago
0
QC for scATAC analysis with Signac
#113
strohstern
opened
1 year ago
0
output pipeline reports by default
#112
ChristopherBarrington
opened
1 year ago
0
update regex in get biomart module
#111
ChristopherBarrington
closed
1 year ago
0
genome preparation workflow runs in series
#110
ChristopherBarrington
closed
1 year ago
0
check parameter values
#109
ChristopherBarrington
closed
1 year ago
0
dump input parameters
#108
ChristopherBarrington
closed
1 year ago
0
move genome out of dataset parameters
#107
ChristopherBarrington
closed
1 year ago
0
merge from dev
#105
ChristopherBarrington
closed
1 year ago
0
use only one genome
#104
ChristopherBarrington
closed
1 year ago
0
check parameter values
#103
ChristopherBarrington
closed
1 year ago
2
unique id is not required
#102
ChristopherBarrington
closed
1 year ago
0
move genome functions out of subworkflows
#101
ChristopherBarrington
closed
1 year ago
0
use only one genome
#100
ChristopherBarrington
closed
1 year ago
0
genome defaults
#99
ChristopherBarrington
closed
1 year ago
1
merge yaml with cat module
#98
ChristopherBarrington
closed
1 year ago
0
unique id is not required
#97
ChristopherBarrington
closed
1 year ago
0
refactor parameters
#96
ChristopherBarrington
closed
1 year ago
0
functions in a library
#95
ChristopherBarrington
opened
1 year ago
1
refactor parameters
#94
ChristopherBarrington
closed
1 year ago
0
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