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I'm getting an error trying to install `Sambamba` on Linux
## Installing LDC
```
[moldach@cedar1 bin]$ wget https://github.com/ldc-developers/ldc/releases/download/v$ver/ldc2-1.7.0-linux-x86_64…
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# Explosive chemistry
#### High-explosives stage
- [x] Added 2,4-DNP and its synthesis recipe #37179
- [x] Added two recipes for phenol synthesis (from acetylsalicylic acid and coal cracking)
- [x…
ghost updated
4 years ago
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I'm trying to run Tigmint with Arks/Links using the `arks-make` pipeline. My run gets through the mapping but hits a snag in the `tigmint molecule` step. The error message doesn't give much to go on s…
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Hello,
The sources (.tar.gz) of the v0.2.1 release won't compile:
```C++
averdier@bioinfo:/tmp/alfred/alfred-0.2.1$ make all …
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It seems the pufferfish is dependant on json, SeqLib, htslib etc.
I installed json and SeqLib, and also downloaded htslib,
Now while building it, I am stuck with the following error:
gcc -…
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- [x] Identify any small cleanup we can be working on right now.
- [x] Document ideas for bigger data model changes that will happen with J3.
Audit existing code in Joplin, get rid of stuff we don…
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I've tried both to install it in the cluster and locally and I get 2 different errors:
1) in the cluster: /usr/bin/ld: cannot find -lgcc_s (for this I'm trying to ask the admin of the cluster to add …
BioRB updated
4 years ago
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I get these warnings when installing the tool. Not sure if this is a known issue (or maybe not a real issue at all?):
```
config.status: creating config.h
make: ./version.sh: Command not found
mak…
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Hi,
I have tested this on many bed files and, I cant seem to figure out out the issue is. Tabix for some reason refuses to read the properly formatted tabix indexed BED file.
```bash
$ bgzip samp…
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BBK* throws a NullPointerException on prepped 5aei. It's unclear if this is caused by a bug in the implementation of the algorithm, a programming error, or something else. The stack trace of the fai…