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bcgsc
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tigmint
⛓ Correct misassemblies using linked AND long reads
https://bcgsc.github.io/tigmint/
GNU General Public License v3.0
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Allow flexible installation location of long-to-linked-pe
#128
lcoombe
closed
9 months ago
0
Fix path. Never hardcode a path, use long-to-linked-pe from PATH instead
#127
ccoulombe
closed
9 months ago
3
Added missing scripts and requirements
#126
ccoulombe
closed
9 months ago
0
Update README.md
#125
lcoombe
closed
10 months ago
0
_sqlite3.cpython-310-x86_64-linux-gnu.so: undefined symbol: sqlite3_trace_v2
#124
bsb2014
closed
11 months ago
0
tigmint compilation issue
#123
ferreirafm
closed
11 months ago
2
Prepare for release v1.2.10
#122
lcoombe
closed
1 year ago
0
Allow fastq.gz and fasta.gz inputs
#121
lcoombe
closed
1 year ago
0
Understanding tigmint-long outputs
#120
TromboneEngineer
closed
1 year ago
3
Feature has length = 0, Skipping - followed by empty output from tigmint-long
#119
TromboneEngineer
closed
1 year ago
9
Fix for Dockerfile smell DL3020
#118
grosa1
closed
1 year ago
1
btllib dependency version update
#117
lcoombe
closed
1 year ago
0
yet another "make: *** No rule to make target" issue
#116
salvatierra8
closed
1 year ago
5
Forward+reverse + long reads
#115
aabaricalla
closed
1 year ago
4
Prepare for release v1.2.9
#114
lcoombe
closed
1 year ago
0
Use sensitive=True for ntLink mappings
#113
lcoombe
closed
1 year ago
0
If span=auto used with ntLink mappings, throw error
#112
lcoombe
closed
1 year ago
0
Prepare for release v1.2.8
#111
lcoombe
closed
1 year ago
0
Add option to use ntLink for mapping step
#110
lcoombe
closed
1 year ago
0
Fix benchmark for tigmint-long minimap2 stage
#109
lcoombe
closed
1 year ago
0
Prepare for release v1.2.7
#108
lcoombe
closed
1 year ago
0
typo fix in tigmint-make
#107
aafshinfard
closed
1 year ago
0
Remove packaged btllib
#106
lcoombe
closed
2 years ago
0
pre-alignment
#105
KnudNorNielsen
closed
1 year ago
2
Prepare for release v1.2.6
#104
lcoombe
closed
2 years ago
0
Update btllib to v1.4.1
#103
lcoombe
closed
2 years ago
6
Accept uncompressed file input for tigmint-long, update btllib
#102
lcoombe
closed
2 years ago
0
About samtools invalid option in tigmint-make arcs mode
#101
ClarenceHsiang
closed
2 years ago
4
Update btllib to 1.2.0
#100
jwcodee
closed
2 years ago
0
Add sort option
#74
PuneetSS
closed
2 years ago
0
Add sort options
#73
PuneetSS
closed
2 years ago
3
tigmint-make: minimap2 is being called with -y argument
#72
mmokrejs
closed
2 years ago
3
Preparing for v1.2.5 release
#71
PuneetSS
closed
2 years ago
0
Added tigmint steps to makefile
#70
PuneetSS
closed
2 years ago
1
Cannot compile the bundled while modified copy of make: make-4.1/glob/glob.c:1342: undefined reference to `__alloca'
#69
mmokrejs
closed
2 years ago
6
tigmint_molecule_paf.py: TypeError: expected string or bytes-like object
#68
mmokrejs
closed
2 years ago
11
src/long-to-linked-pe v1.0: Using more than 6 threads does not scale, reverting to 6.
#67
mmokrejs
closed
2 years ago
5
Does bin/tigmint_estimate_dist.py really work with FASTA files as well?
#66
mmokrejs
closed
2 years ago
5
README does not list all dependencies
#65
mmokrejs
closed
2 years ago
2
Respect PATH and few more parent env variables to speedup sorting
#64
mmokrejs
closed
2 years ago
3
tigmint-make ignores $PATH and is supposed to be run from unpacked source tree instead
#63
mmokrejs
closed
2 years ago
3
pigz may be better replaced by bgzip
#62
mmokrejs
closed
2 years ago
2
samtools sort may be replaced by bamsort which scales better
#61
mmokrejs
closed
2 years ago
2
Respect $TMPDIR as anticipated by sort tool
#60
mmokrejs
closed
2 years ago
1
Add missing dependencies and clarify ONT/PB handling
#59
mmokrejs
closed
2 years ago
0
Tally attempted corrections
#58
janetxinli
closed
2 years ago
0
Check genome size param for span=auto
#57
janetxinli
closed
3 years ago
0
tigmint-long error
#56
estolle
closed
2 years ago
1
v1.2.3 release
#55
lcoombe
closed
3 years ago
0
Update stalebot to github actions
#54
lcoombe
closed
3 years ago
0
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