-
Im having difficulty getting my ChIPSeq data to autoscale since the popup menu does not appear to exist on the new IGV version, is this a bug? It doesn't appear to be working on the older IGV version …
-
In the bigWig creation stuff, I've assumed that the bedGraph would be in the same sort order as the BAM file header. This isn't actually the case and can cause issues. The solutions are (1) write a di…
-
I did these as instructed on README.
```
git clone git://github.com/CampagneLaboratory/goby.git
cd goby
git checkout stable
ant -f build.xml jar
```
So far no error reported.
```
$ ./goby
Trying to…
-
This fault was reported on SeqAnswers: http://seqanswers.com/forums/showthread.php?p=188553#post188553
`bismark2bedGraph -o ./output/chr10.bg ./CpG_chr10.txt`
-
Hi there,
I run into an error when running PARE. `RESULTS.TXT` only has one line.
It is taking really long to run. ~6 hours for a 1.5G bam.
anyway to speed it up?
EDIT. I saw a `p` flag, but is there…
-
The format uses on average one-third of the size of existing bigWig files and improves random query speed up to 100 times.
(CWig: compressed representation of Wiggle/BedGraph format)
You can also use…
-
Hi Gloria!
Ali's email went straight to my junk folder for some reason. I just saw it, so I'm starting now, but I'm a little confused. I found the samples (a36002-5) in the directory Ali mentione…
-
I think there must some way to calling the methylation frequency in watson and crick helix chain separately. Am I right? Where I can find this information before the methylation frequency calling?
-
I do a commandLineTool for linux sort command and would like to have output file the same as input+suffix
```
outputs:
- id: "#sorted"
type: File
description: "The sorted file"
outputBi…
-
- is there a particular reason why multiBigWigSummary only works for two or more files?
Accepting single-files would be similar to UCSCtools:bigWigAverageOverBed
- we need to provide better descript…