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In some recent revisions "regulation of heterochromatin spreading" and heterochromatin boundary formation were merged.
However, according to
the FACT complex does have a distinct role in "hete…
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Hi:
I am wondering whether chromosight can be used to detect chromatin loops based on restriction fragments level (1f, 2f, etc) HI-C matrix? Such as store Hi-C matrix in cooler format in restrict…
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@vanaukenk
I was chatting with @goodb and @kltm on Gitter and realized Noctua Form is not reading enabled by Complexes according to shex
![image](https://user-images.githubusercontent.com/22739…
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I've used sushi previously, with a custom formatted data frame (chr,start,stop,gene,score,strand) using the plotGenes function to create a plot of labeled enhancers. Is it possible to label these indi…
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Hi Jim,
I've been using IGV quite a bit to review structural variant evidence. To aid scanning across events it would help if IGV would support the BEDPE format (described under the BEDPE section…
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https://docs.google.com/spreadsheets/d/1D2xpuXBuMgPizUIixfJrMFiuASDdGmAgwM4S-jI2Rmw/edit#gid=0
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Hi,
Thanks for this piece of software which looks very exciting. I have some multi-ome data that I would like to try this on and in preparing the scripts, I was using some publicly available data f…
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Hi there,
Just wanted to say great paper, its fantastic that you can push the throughput by optimizing the decrosslinking.
I am currently using Pore-C but adapted using DNase based method to fra…
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Hello! I am trying to integrate two sc datasets and am having issues with the integration. The datasets obtained are both pre-processed. Here is my code:
```
# making chromatin assay to ATAC seu…