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Hi, I am assembling mouse genomes with PacBio Sequel data.
I am running in a similar issue like #417, however, removing the correction/1-overlapper/results/ and re-run canu did not solve my problem…
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Hello Canu team,
I'm trying to run canu to assemble a 14 MB genome with MinIon reads.
It works find for a couple of samples, but in two of them I get this:
```
-- Canu release v1.5
-- Detect…
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Hi again,
I am working on assembling a 3.3 Gb invertebrate genome using about 50X PacBio coverage (160 Gb reads). With your suggestions for specifying grid options (Issue #886) I was able to get th…
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According to gfa-spec, L-line in GFA format looks like:
`L `
In CANU(v1.5), the CIGAR string takes `` as query, and `` as reference.
Would you mind considering swaping them as https://github.…
XLuyu updated
7 years ago
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In many assemblies we are finding that assembly graph contiguity is not much higher than that of contigs extracted from it. This is true not just for miniasm but also other assemblers.
Why might th…
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Hi Team
I've been trying to install vg on my Mac and my Linux platform with all the procedures you describe for linux and for OS (using MacPorts or Homebrew). I always got the same kind of error as b…
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For the following graph, it aborts with the following error:
```
[VG::bluntify] warning! overlaps of {"overlap": 151, "from": 2534702, "to": 2478220, "from_start": true} are not identical and coul…
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I have a similar issue like #546 and #718
I installed canu 1.7 on an ubuntu (16.4) workstation. I have a 1G assembly length but with a very low nanopore reads coverage (5X).
This is the command I …
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Hi, I keep on getting this error when running Canu.
```
-- Running jobs. First attempt out of 2.
----------------------------------------
-- Starting 'bat' concurrent execution on Fri Jul 7 04:0…
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```
bcalm -in pe400.in -out hsapiens-unitigs -k 64 -abundance 5 -nb-cores 32
…
Kmer-counting wallclock: 45118.6 secs
post-kmer counting -- memory [current, maximum (maxRSS)]: [2044, 4573] MB
DSK u…