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Hi Dr. Wang,
I have just read your paper "A mouse model with high clonal barcode diversity for joint lineage,
transcriptomic, and epigenomic profifiling in single cells" and fairly interested in the…
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Is it possible to dump the read ids corresponding to those reads which supported a variant from `nanopolish variants`? I would like to use this for haplotype phasing.
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Hi, is there a log in MethylDackel that records how many reads/bases are lost to issues like reads being discordant, singletons, dupes, or bases being below Q-score threshold, etc.?
Would it be pos…
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LOMPE annotates with VEP, uses svdb for freq - should be fairly doable!
https://github.com/kristinebilgrav/LOMPE/
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/rhielab/TENET
Confirm the following by editing ea…
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Hello! Thank you for developing this great tool. I was wondering if there is an option to output information about CHH and CHG methylation. This would be used to assess the efficiency of bisulfite con…
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### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.encodeproject.org/
###…
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Hello. Thank you for creating this useful tool! I called mC and hmC bases, aligned the .bam files, sorted and indexed, and then created bed files. Then I wanted to perform modkit dmr pair on my two sa…
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Hi,
I am using methphaser as a singularity image on an HPC. I have made the singularity image work with the test data, so shouldn't be any technical issues with the image.
I am doing adaptive se…
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not global -- not spam users.
Not sure related to rendering as I tried to also post a comment of simple "Thank you!" and received `Language "so" is not one of your supported languages ['en']!` b…
lshep updated
10 months ago