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Per user report:
I have been experimenting with the annotator found here:
https://bioportal.bioontology.org/annotator
Settings:
Text entered into annotator: invasive mammary carcinoma
Sele…
mdorf updated
2 years ago
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I was expecting that when we ran make prepare release that it would call a robot reasoning routine on the cdno.owl file and have a clean concentration hierarchy, akin to running elk locally in the ont…
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User on the support list reports:
> in your FMA 5.0.0 CSV file the following entry is wrong:
>
> `http://purl.org/sig/ont/fma/fma85802,FMA attribute entity,,,false,,,http://www.w3.org/2002/07/o…
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- [x] Create namespace for the part of the ontology that is BONSAI-specific (i.e., which does not reside elsewhere): [purl.org](http://purl.org/) does not work for now, so we need to create something …
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Define top-level metadata items needed to discover model products. The concept should be generic enough to be extended to model output not currently included. Should allow future extension towards sat…
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Contributors should have conventions to follow when them are submitting ontology files that extend existing concepts.
Discussions have been held that lean toward keeping semantic extensions in a di…
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Right now we're just using `File` for everything, however it would be good to include more information like `format`. The trouble with that is we don't have any ontological mappings for QIIME 2 types …
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We should use the same ontologies (or provide mappings).
While all three systems use ResearchStudy.condition to indicate the condition that is the focus of the study.
All three have a signi…
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I suggest adding a DP for ecosystem and biome. This can serve a number of purposes.
The first is documentational - the description in the yaml can server as a single authoritative source for editor…
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```
Kazakov et al.'s "Concurrent Classification of EL Ontologies" report [1]
provides a set of inference rules for a fragment of OWL 2 EL that can be used
with the BFP method to facilitate answering …