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### Description of the bug
I get the following error when running quant.ms using an sdrf.tsv file:
Error in setnames(x, value) :
Can't assign 4 names to a 0 column data.table
Calls: OpenM…
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Comparing simulation results with observed data may become a challenge when reported observed values are 0 or below a lower limit of quantification (BLOQ). By desing, simulated values will never becom…
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[sleuth](https://pachterlab.github.io/sleuth_walkthroughs/trapnell/analysis.html)
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When I try to retrieve Gene Expression Data through this code:
query$rnaseq
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I'm currently trying to consider using `dk_logic.dk` as axiomatisation of first-order for proof generated by archsat, and the file seems to be lacking any comment explaining things.
While some cons…
Gbury updated
6 years ago
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After the new release of GDC made on March 29, 2022 the `GDCDownload()` function still works but the `GDCprepare()` function gives an error when the query is for RNA-Seq data. Here is the minimal cod…
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I use
`GenomicDataCommons::status() $commit [1] "e588f035feefee17f562b3a1bc2816c49a2b2b19" $data_release [1] "Data Release 16.0 - March 26, 2019" $status [1] "OK" $tag [1] "1.20.0" $version [1] 1`
…
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Following the global floating valuation of tokens described in ticket #18, the next important step is to determine a credible social value of each token. The social value of each token will always be …
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Please see the following information:
> An exception occured running AlphaPept version 0.5.1:
> ....................................................
> can only concatenate str (not "int") to …
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Hi,
Thank you for this excellent software and your updates and maintenance.
I analyzed the same data with 1.8.1 and 1.9, respectively, and found the protein intensities are quite different.
Do y…