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Dear developers
Hello, I'm studying the transposons of Orthoptera insects. I used repeatmodeler to build a self built transposon Library of species, and then used the self built library to annotate…
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Hi again,
I am running the dependency installation and after mamba installs RepeatMasker, it tries to activate the environment but fails to do so as below:
```
Preparing transaction: done
Ver…
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Greetings, I write because I'm having problems with the "Counts" part of the analysis: the " Counts.txt" file contain only the count of totals TE and the "na" ones; the others fields have 0 even if "r…
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I think the ./configure command should be performed at the installdir so that the corresponding perl module path in `@INC` would be correct. Here is what I got after easybuild RepeatMasker without man…
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Hi Kevin,
thanks for creating this amazing pipeline. The approach to combine differently sensitive annotation tools is much needed and the detailed documentation allows a quick implementation even …
mgrew updated
2 years ago
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Hi,
I'm running braker with a bam file mapped with [star](https://github.com/alexdobin/STAR):
`braker.pl --genome_soft.fasta --bam Bud1Aligned.sortedByCoord.out.bam --softmasking --cores 4 --worki…
fraca updated
2 years ago
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Good afternoon:
I am trying to run the pipeline with your COLO829T testing data set, but just could not get it work. I am kind of sure I have downloaded all files and put everything in their right di…
gbnci updated
2 years ago
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Hello Shujun,
I was running EDTA v2.0.1 on a maize genome with the following command
`lib=/data/songlab/new_Mustart/gene_annotation/ab-ini/Db/NAM_TElib.fasta
genome=/data/songlab/Mu/w22/w22_unmap…
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Dear Kevin,
transposon_annotation_reasonaTE is required Python 2.7, but RepeatMasker is required Python 3.
Could you give me some suggestions,
with regards
Ramky
![image](…
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Hey, great tool! Looks very promising to combine it with RepeatMasker gff3 annotation, and I love the way of installation - so easy! Every python program should do this!
So I tried it on a 44K-sequ…