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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1236
JN.1+C22482T(S:T307I)
GISAID query: T3565C,C22482T,T22926C,-9142,-C774T,-11747,-1779,-18738,-14334,-8578,-C1973T,-25012,…
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From branch 35 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
JN.1.4+T18453C+G28209C,del21653_21655(Orf8:E106Q, S:S31-)+G22599C(S:R346T)
Brazil just uploads a lot of seq…
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KP.2.2+A22995C(rev), C27382A, T27529C(Orf6:L61I,Orf7a:F46L, S:K478T(rev))
GISAID query: G27382A, T27529C
No. of seqs: 3(Canada 2 USA 1(from India))
First: EPI_ISL_19313873, USA from India, 2024…
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**Defining Mutations:** `LB.1` > `G8083A(ORF1a:M2606I), C22281T(S:T240I), C22995G(S:T478R)`
**Query:** `G8083A, C22281T, C22995G`
**Earliest seq:** 24-05-24 (`EPI_ISL_19188794`, Texas, USA)
**Lates…
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KP.2.6+C22883T(S:L441F)
GISAID query: T21752A,C22883T,G17334T
No .of seqs: 16(Australia 1 Canada 2 UK 3 Germany 4 USA 6(2 from UK))
First: EPI_ISL_19244606, Germany, 2024-6-5
Latest: EPI_ISL_…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1953
There is another LB.1 sublineage different from LB.1.9 that got the uptrending S:K478T reversion.
In addition …
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```
# 22 BNT162b2-vaccinated sera collected 1 month after dose 3 and 20 sera collected from COVID-19 patients who were not vaccinated but infected by BA.1 sublineage
Fluorescent focus reduction n…
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## Describe the bug
`bc7_litcovid` generates instances with out a `text` field, e.g., `{'id': '34', 'document_id': '34219343', 'text': None, 'labels': ['Prevention']}`
## Steps to reproduce the bu…
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The Super Search does not seem to display the results for each node (Glycan, Protein, Site, etc;) when searching by organism name for some organisms, but will populate results when searching by TaxID.…
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There should be a KP.3.2/LB.1.7+C24421T sublineage that got the S2 from this LB.1.7 branch reverting S:V1104L and adding C24421T.
Interestingly it has got also a Sotrovimab known escape mutation with…