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Thanks all for your efforts on a project that grows increasingly complex. There is data on VE on unvaccinated vs vaccinated vs boosted that I believe warrants an update.
The current multipliers a…
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From branch 10 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089
JN.1 >G17562T > C2395T > S:R346T (G22599C)
Query: C2395T, G22599C,C18894T,-C1762A,-C774T,-
Samples : 35 (Irela…
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Big thanks to @Over-There-Is
From: https://github.com/sars-cov-2-variants/lineage-proposals/issues/2023
tr…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1908
XEC has three main branches one defined by Orf1a:A599T the other defined by Orf1a:I1367L that is convergent with Kp.3.3.4
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### Model Name
Predict bioactivity against Main Protease of SARS-CoV-2
### Model Description
MProPred predicts the efficacy of compounds against the main protease of SARS-CoV-2, which is a pr…
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It looks like we have another date with wrong data, **United Kingdom** has no increase according to this data, but the actual source is telling us a different story:
Total cases: 1391
Total deaths…
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Upper respiratory tract microbiome profiles in SARS-CoV-2 Delta and Omicron infected patients exhibit variant specific patterns and robust prediction of disease groups – Shankha Nath – Microbiology Sp…
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Following the guide for [wastewater experimental branch]( https://gist.github.com/DrYak/e28d5d523e644ea455748d540a32ad4d). I got stuck in the last stage of vpipe deconvolution as you can see in this e…
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From branch 24 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089
JN.1.4 > T18453C > C7732T, Orf1a:D4117N (G12614A),S:T22N (C21627A), G22111A, S:R346T (G22599C), C27944T
Query: …
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From branch 19 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502
KP.2+C832T+Orf1a:V28I,S:S31del
Query: T14700C ,C832T, C897A
No. of seqs: 26 (USA 21 Canada 1 Guatemala 1 Italy…