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I'm having trouble interpreting the column `FINEMAP.CS`. Is there a difference between `0` and `NA`? I was expecting `0` since this is what is used by polyfun when a SNP is not assigned to any credibl…
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Currently, it is not possible to map to both a value_as_number (+unit) AND value_as_concept. The baseline field mapper is divides all codes into discrete fields (has mappings for values) OR numeric fi…
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Hi,
Congratulations on the preprint and many thanks for making this available.
I am just about to make our own LD reference files according to your detailed tutorial, to cover EUR, AFR, CSA and …
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Hello,
This is not a bug or error I am reporting, per se, but I am trying to use PRSice with bgen files split by chromosome and a sample file. The command runs, but I am concerned with a message t…
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Hello,
i tried using your example datasset "ukbxxxx" and when i tried to use the icd_diagnosis, it came up with the error:
ukb_icd_diagnosis(mydata, id = "1", icd.version = 10) ## mydata is same…
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Currently we use a lot of backup storage on TSD.
We need it, for sure, on acquisition data such as EEG or MRI scans.
However, I'm not sure if backup is important for derived data, e.g. UKB. It's …
ofrei updated
3 years ago
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Hi,
I ran the following command:
`fit_obj2 system.time -> XPASS
In addition: Warning message:
In ref1_info$A1 != test_info$A1 :
longer object length is not a multiple of shorter object length…
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Hello,
First, thank you for your contributions. Amazing work.
We're looking to run the regenie method on UKB Exomes. I understand your recommendation to use genotype arrays in step one. My ques…
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Prior to running any of the LDpred2 code, I have set up paralellisation in my R session as follows:
```
library(data.table)
library(foreach)
library(doMC)
# Auto detect if we're on compute no…
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## Feature Request
SNMP is hard... and annoying. I looked at telegraf to add it to my stack hopefully improving the experience. However, so far all the "ancient" tools seems way easier to configure a…