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**Is your feature request related to a problem? Please describe.**
For a user to add a workflow/tool to an organization, the user either has to belong to the organization or personally know an organiz…
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I have an ATACseq data set that includes three different treatments, each with three biological replicates. I have paired-end fastq files for each replicate. The question is: Can the fastqs for eac…
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Hi,
_I'll manually synchronise this issue with Jira, I've raised it here as I think it has better exposure, might be useful as a reference and I'm going to reference it from a different issue: http…
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I have been using `atac.subsample_reads` but I would like to a seed for this analysis so I can ensure different reads are subsampled across different runs, is there a way to do this? I can't see it li…
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Originally posted this two in the JIRA issue tracker back in August. Reposting here since it didn't get a response over there: https://broadworkbench.atlassian.net/browse/BA-6548
> Hello everyone,…
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As a non-specialist user, I would like to learn about IIIF content which I encounter while browsing the web and use it in ways not anticipated by the provider:
## Scenarios
1. I have an applicatio…
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Hi Chris,
congratulations for your 'experiment'!
I want to try to use it to publish some drawings in my web.
I've tryed with your code but I'm doing something wrong.
I think that my problem is with t…
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`ValidateVariants` requires a large amount of memory (>16Gb) to validate a GVCF when another GVCF is used as the interval list. This is not the case if a regular interval list is used instead. This co…
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Briefest of discussions with Jose. NOTE: All naming up in the air.
Enable a runtime attribute such as `retryOnStderrPattern` that populates a value `retryAttempt`/`retry`/`retryCount`/`retry_count`…
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Dear all,
I am trying to run your ATAC pipeline, launching the following script with qsub on our cluster:
************************ lc.sh ************************
source /abcd/conda.sh
conda …