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Hi Glenn!
I'm currently running `cactus-hal2maf` on a new alignment I've generated using Cactus v2.8.2. I'm running Cactus as a singularity image on a computing cluster. Anyways, I have an alignmen…
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Hi guys!
I have run everything with Russian dataset to get alignments. Then I used these alignments to train a speech synthesis model (Fast Speech 2) on phoneme level. But then I can't figure out …
diff7 updated
3 years ago
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The file `examples/proteinsw/proteinsw.cu` contains a simple example of scoring potential alignments.
Is a similarly simple example available of traceback?
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Hi,
I've found a way to reduce background repeat counts.
In line 333 of https://github.com/unique379r/strspy/blob/main/scripts/STRspy_v1.0.sh reads are filtered so that only unmapped are elimi…
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Any plans on adding CIGAR strings to SAM output so I can load the alignments in a genome browser?
_Originally posted by @yhoogstrate in https://github.com/vpc-ccg/circminer/issues/4#issuecomment-64…
fhach updated
4 years ago
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Hi, thank you for the previous one. now I fixed it.
I am using 10x single cell data and also spatial data to run numbat.
but it shows like this.do you know what should I do?
root@aba37e368b…
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Hello,
In the paper about A. laboriosa, you estimated divergence time among species based on the concatenated alignments of 4-fold degenerate sites from single-copy genes using MCMCtree in PAML v4.…
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In looking at some of my datasets, I found that Tangram calls using BWA-MEM alignments passed through the TANGRAM_BAM tool ONLY show split-read calls. Not a single paired-end read was used for any MEI…
RPSeq updated
8 years ago
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As an (reference) implementer of both an issuer and a verifier of achievements, I find it harder than necessary to implement alignments at all those places. I really only need alignments in the Achiev…
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Hi @gahdritz,
Here are a bit more details about my error when adding --trace_model option while doing inferencing.
Here is the commands I run:
```
python3 run_pretrained_openfold.py \
/mnt…