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Hello,
Could you please help provide the code for annotating the interaction sites (within 4.5 Å) between antibodies and antigens?
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### Project short name:
LungTransplantationCOVID-19
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1LF9_E1iw…
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### Description of the bug
Dear developers,
I noticed the example of samplesheet is not correct, especially the `control` column.
The `sample` column contains the name of the samples plus the rep…
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## Erroneous Behavior
It's trying to update `uv` with `self update`
## Expected Behavior
Update `uv`
## Steps to reproduce
`topgrade run uv`
## Possible Cause (Optional)
I…
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We need to generate a facet search OpenSearch index. The purpose is to resolve targets/diseases from their facets, e.g. search for all the targets where facet is "search term".
There are two indic…
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### Please confirm there isn't an existing package request
- [X] I have searched through package requests
### Homepage
https://getantidote.github.io/
### Maintainer
- [X] Would you like to be the…
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New term request Francisella tularensis antibody titer high in blood (seidel_190313154731): Tularemia; antibodies UMLS: 2748094
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The HuBMAP SDK has been started and contains a python client interface into the Entity API web service. We'd like to add the functionality of a python interface for the Antibody API web service into t…
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Not having looked at this repo for a few months, I've discovered some issues which cause confusion:
1) empty values in the database (null) display as the string 'null' and not as a blank field (e.g.,…
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Hi，Developer！
How to understand the function reconstruct_multi_models() and what it does to the model.
Best,
Jamie
Note:
amis.py
```
def reconstruct_multi_models(
wt_seq,
…