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**Is your feature request related to a problem? Please describe.**
Where can I find the command used in the web version for bacterial and fungal antiSMASH versions? At the log file you can see how it…
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Hi,
I m working on the greengene tree avaible here : gg_13_5_otus_99_annotated.tree.gz http://greengenes.secondgenome.com/downloads/database/13_5
This file contains a tree based on 16S RNA fro…
dridk updated
7 years ago
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I am wondering how can i add something like [Pseudomonas aeruginosa ](https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa#:~:text=Pseudomonas%20aeruginosa%20is%20a%20common,of%20considerable%20medica…
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I am trying to run parsnp for 330 bacteria genome (genome size ~2mb). The alignment seems to work properly. but it failed in the last step, the error message is pasted below.
Your help would be great…
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How to get OTU picking with IMG used metagenome sequencing data?
The shogun v0.0.1 couldn't installed by the commands you gave.
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Hi @jaumlrc,
Thank you for the wonderful tool. However, I came across a issue, would be great help if you can look in.
Currently, ProphET is not compatible with GFF generated using Prokka (--co…
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I'm classifying representative sequences of quality controlled and clustered 16S reads with command:
java -jar AlignmentTools.jar pairwise-knn query.fq db.fa
The db file is unaligned prokaryotic sub…
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Hey there, @shenwei356 :)
Thanks again for not only additional wonderful software, but excellent documentation as usual!
I'm looking for a better way to taxonomically classify predicted coding …
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1. **Lab Name**: **Microbiology Virtual Lab II**
2. **List of Experiments and Repositories**:
Voges-Proskauer Test
https://github.com/virtual-labs/exp-voges-proskauer-test-au
v1.0.0
Trip…
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Hi,
I am trying to build the database. But there is this constant issue
`rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/762/265/GCF_00076…