marbl harvest issues - Githubissues

marbl / harvest

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example gbk file not working

#52 jianshu93 opened 1 year ago
0
Harvesttools BED file error

#51 GenomeXB71 opened 1 year ago
0
ParSNP duplicates randomly chosen reference in tree

#50 dutchscientist opened 3 years ago
0
not creating vcf file

#49 1064821368 opened 3 years ago
3
Parsnp Error

#48 hao467 opened 3 years ago
0
Made source code or ppc64le binary available

#47 jshleap opened 4 years ago
0
each input fasta file has more than one chromosome and plasmid?

#46 limin321 opened 4 years ago
0
very very strange error，puzzled，help！！

#45 hy-zheng opened 5 years ago
0
parsnp error

#44 hites77 opened 5 years ago
0
parsnp calculates genome size wrongly

#43 Ekie22 opened 5 years ago
1
Unable to build Parsnp on Ubuntu 18.04.1

#42 isaurabhkr opened 5 years ago
3
parsnp not creating vcf file

#41 hafizmtalha opened 6 years ago
1
parsnp does not recruit all genomes provided

#40 leogg23 opened 6 years ago
0
What application opens the gingr file on linux?

#39 yseif opened 6 years ago
1
Only 2% for core percentage

#38 korinalb opened 6 years ago
0
Low cluster coverage

#37 karchern opened 6 years ago
1
Work with 1000 genomes

#36 OrsonMM opened 6 years ago
1
gray zones

#35 shlomobl opened 6 years ago
0
Snapshot failed

#34 Ivalize opened 6 years ago
0
A small subset of samples running in sample directory

#33 ghost opened 6 years ago
0
majority of input genomes get ignored

#32 karchern opened 6 years ago
3
Parameter : -a (default = 1.1*Log(S)), VALUE OF S ?

#31 ghost opened 7 years ago
0
indels

#30 XueqiongLi opened 7 years ago
0
ERROR: ref genome sequence seems to aligned! remove and restart

#29 snayfach opened 7 years ago
3
parSNP issue

#28 jlf292 opened 7 years ago
0
What is the different between Newick formatted core genome SNP tree and the tree in Gingr file

#27 tangna2017 opened 7 years ago
1
parsnp failed to generate phylogeny

#26 haol04 opened 7 years ago
2
parsnp with genbank file error

#25 sdewell closed 7 years ago
1
Missing VCF file

#24 snayfach closed 7 years ago
2
Using parsnp with a draft reference

#23 mgroussi opened 7 years ago
4
alignment of 1000 Klebsiella pneumoniae genomes with parsnp

#22 itsvetkova opened 7 years ago
5
ignoring sequences ending with the same numbers as the reference genome

#21 aldertzomer opened 8 years ago
1
parsnp fails on Manjaro (Archlinux)

#20 lduvaux opened 8 years ago
0
parsnp consider - in contig names as gaps

#19 jgugliel opened 8 years ago
1
gingr on hidpi displays

#18 hvbakel opened 8 years ago
0
parsnp ignores file called "1.fasta"

#17 tallnuttcsiro opened 8 years ago
1
Question about Gingr

#16 gsong1205 opened 8 years ago
3
need some help with -c

#15 fengyuchengdu opened 8 years ago
1
MUM calculation

#14 adam-lab opened 8 years ago
0
How to use parsnp to align against a multi-chromosome reference?

#13 minisciencegirl closed 9 years ago
3
Question

#12 gotero opened 9 years ago
1
Parsnp Error

#11 alantsangmb closed 9 years ago
8
Parsnp: Error creating Gingr input file

#10 verheytb opened 9 years ago
3
gingr .vcf export problem with reference state coding

#9 tallnuttcsiro opened 9 years ago
0
Index Error

#8 minisciencegirl opened 9 years ago
2
Generating a whole genome POA

#7 iqbal-lab opened 9 years ago
10
Question about parsnp

#6 yunyuy opened 9 years ago
2
Error when using parsnp in Harvest v1.1 release

#5 treangen closed 9 years ago
1
gingr crashes when you close the window on CentOS 6.6

#4 xzy3 opened 10 years ago
0
Problem running parsnp

#3 ejfresch closed 10 years ago
12