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I would do it myself, but I don't have permission to upload to https://pypi.org/project/sbpack/
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https://github.com/common-workflow-lab/cwl-ts-auto/tree/main/src
This is autogenerated from the CWL v1.2 spec, and will get further updates as that auto generated code is improved.
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## Expected Behavior
I'm just trying to test out HTTP(S) imports as mentioned in https://www.commonwl.org/v1.0/SchemaSalad.html#Import
I'm expecting `cwltool --validate` to say it's valid
Here's my…
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**Describe the bug**
I have updated PGAP to the latest version of 2022-02-10.build5872. The test genome is working fine and I got the output.
But for my genome the result is "PGAP failed, docker exi…
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See #2534.
┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/TOIL-46)
┆friendlyId: TOIL-46
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**I've downloaded and run successfully PGAP in the November 2021. After then I move pgap folder to 2.Tool folder. Recently when I return to run pgap on a Salmonella dataset, it consistently fails. Thi…
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In the [spec](https://www.commonwl.org/v1.0/Workflow.html#WorkflowStep), `run` field can be a `string`, a `CommandLineTool`, a `ExpressionTool`, or a `Workflow`.
IMO it is obvious what happens in …
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Hi Team,
We are facing the below issue when running the PGAP pipeline with flags --taxcheck --auto-correct-tax or only with --taxcheck-only. The pipeline terminates with below docker error in conso…
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I am trying to run the cat-tool-shortcut conformance test that has been packed using `cwlpack --json --add-ids`:
```json
{
"baseCommand": [
"cat"
],
"class": "CommandLineTool",
"c…
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which is not necessarily the default branch.
For example, the default branch of https://github.com/common-workflow-language/cwl-v1.2/ is `1.2.1_proposed` but that has not been ratified by the CWL L…