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To infer organisms form the fastQ samples, the top most over-represented organisms in [SRA](https://www.ncbi.nlm.nih.gov/sra) are being selected based on the following parameters:
- Fraction of sam…
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I get the following error, when I select Tree root = P0 (other categories do not matter):
`An error has occurred. Check your logs or contact the app author for clarification.`
Generally, I would l…
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PTN000220169 adds "endopeptidase activity(CONTRIBUTES_TO)" to members of the METALLOPROTEASE (PTHR11851) family.
PTHR11851 comprises both subunits from two homologous complexes - using humans
as the…
sjm41 updated
4 years ago
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[Modulok diagram](https://drive.google.com/file/d/1fSxyuqAZj-sq1W9OZR_4cO5s5JKC_kBi/view)
~~Kép forgatása a WordObject paraméterei alapján.~~
~~A WorldObjectTransformer-t kell kiegészíteni az ezér…
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At the moment, the autocomplete only show the 10 best results. Considering golr has been problematic to find the best results, this prevent users to find for instance the gene they were looking at.
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I'm trying to use this tool for WGS data on _C. elegans_ so I'm using the `-m wgs` flag. Furthermore, I have no normal samples to use for the reference so I use the `-n` flag without specifying any ad…
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I've had success following the **Getting started guide** with both CPU and GPU on the example datasets and now I'm trying to run the CPU version on my own data, _C. elegans_, but am getting an error:
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I am unable to find zebrafish gene in both the form and in the graph view.
The genes I am trying to annotate (and are not found in the interface) are:
- nrp1a (ZFIN:ZDB-GENE-030519-2)
- nrp1b (ZF…
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I am curating PMID:21795393 and according to this paper, there are two types of condensin complexes, condensin I and condensin II. Originally in GO we had a single subtype of condensin complex called …
ukemi updated
3 years ago
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I'm able to run the `samplot.py` on the example data and on my own data but am having issues when I try the `samplot_vcf.py` script.
As far as I know there is no Repeat Masker track for _C. elegans…