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Hi
Thank you so much for your nice tool and your hard work.
I have two question:
1. I used antismash verion 7 and the tool works well ???
2. How to choose cutoff value for tree classifier, logis…
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In looking for miRNAs in AmiGO it struck me that we seem to have only Dmel and Atal:
The reason for this is that annotations from RNAC are all uniformly typed with 'ncRNA'
```
RNAcentral URS0…
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Hi
Thanks for your nice tool!
I tried to run VEP by Singularity, but I got confused about where the path of Samtools should be placed.
I have added the path of Samtools to `~/.bashrc`. Howeve…
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I had run the genome annotation and merge them using the evm, then I want to uodate the gff3 using pasa
this was my commands "Load_Current_Gene_Annotations.dbi -c alignAssembly.config -g ../../../..…
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From @aopisco:
If a user creates a cell type annotation as in #996, allow them to link each label to a specified `gene set` as evidence (with congruent, ontology-based names for labels and gene sets)…
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Hello,
I ran funannotate annotate with the command :
funannotate annotate --gff "/shared/home/ymestiri/projects/annotation_fusarium/Funannotate/UK0001Mo.gff3" --fasta "/shared/home/ymestiri/proj…
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I receive the error message,
ValueError: Unable to determine gene collection. Please make sure the input dataset specifies either HUGO gene symbols or Entrez gene ID's.
W1_1.var.head()
gene_id…
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Hi,
Thanks for Scenic+.
I am running the Scenic+ and getting an error on my data as well as the pbmc data after running
`from scenicplus.wrappers.run_pycistarget import run_pycistarget
run_p…
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2021-03-13 16:16:44 : Written final scores for species 117 to graph file
2021-03-13 16:16:45 : Written final scores for species 110 to graph file
2021-03-13 16:16:45 : Written final scores fo…