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I'm exploring working with PhyloWGS, and can't quite understand what's going on with the CNV inputs. The docs from the front page say:
cnv_data.txt: Note that if you are running without any CNVs, …
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Hello,
I'm writing to you because I'm having a few problems with Aldy. First, I ran it through all the possible genes. I've had difficulties with the CYP2A6 and CYP2D6 genes, but I'm going to focus…
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Hi,
I have output from different studies of 16S amplicon-sequenced reads with different sample sizes. They are from either V4 or V3-V4 regions but I want to analyze them together. I have run DADA2…
ghost updated
1 month ago
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Longitudinal 16S dataset:
Justin D. Silverman et al 2018. [Dynamic linear models guide design and analysis of microbiota studies within artificial human gut](https://microbiomejournal.biomedcentral.…
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Hello,
I'm trying to run panaroo but this problem came out:
subprocess.CalledProcessError: Command 'cd-hit-est -T 10 -i /home/agargam/TFM/Archivos gff/Archivos_GFF/CV_Schmerer_Salmeron_Carlos_Gr…
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Hi, I can not reach some of the modules in the "inputs" module. The ones I can use are shown below. Is there another way to use the other ones?
![image](https://user-images.githubusercontent.com/…
ervau updated
2 years ago
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`sce
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I am currently trying to get an estimate on genohub of the cost it would be to process 12 samples for RNAseq including sequencing and library prep.
I have selected RNA (polyA-selected) project typ…
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Hello,
I have followed the BaitSTR workflow to create 'contigs.str.fa' for one of my datasets. I am now trying to use BaitSTR_type and it looks to be getting hung up on creating an index. I think …
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Hi Josie,
I would like to know that how do NanoCount deal with reads with multiple alignments? I know the EM algorithm was employed to estimate the transcript abundance, but it's not clear how it h…