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I ran eggnog-mapper on the web and the out.emapper.orthologs file had a line which was labeled one2many, but seemed to only map to one gene.
NC_036025.1:1089523-1090612(-)_1 one2many Saccharomyces…
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To complement loading them from a file.
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Seems like if you request multiple processors the FastTree step should try to use FastTreeMP so it can gain speedup for the tree step?
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Hi GO -- we have a daily process monitoring for changes to GO annotations on your FTP site:
ftp://ftp.geneontology.org/pub/go
We've been getting sporadic failures for the last week with downloadi…
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Hey @BPerezLamarque
Thank you for an amazing paper and tutorial for running the "HOME_model".
I am getting an error where the OTU tree tips need to match the host tree, but they need to be unqiue…
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Hi! I am using a Mac (BigSur) for running VMD. I ran 1us simulation in Desmond on a Linux box (copied output on Mac) and wanted to run PCA analysis. In VMD when I load the molecule (and the trajectori…
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Hi David,
I have been using Orthofinder to try and generate trees for my orthogroups. I am using a large quantity of genomic information meaning that I have well over 2000 orthogroups for each of…
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Hi,
Hopefully this is just a simple mistake on my end and an easy fix. I am currently having problems running ASTRAL when incorporating a mapping text file to constrain multiple individuals of one …
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Hi. This is more of a question and not an issue. I have two cases 1. I have two groups A and B and I have one alignment for them which I am using in FEL-contrast to choose A and B as foreground and ba…
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I found a patent sequence (FV537213.1) in cov2.fa which is obviously non-biological (no Cs!) and causes problems for sequence search and comparison algorithms because it is low complexity. Perhaps we …