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hi!
this project looks super interesting!
One issue that would personally concern me if I were to use ggd is that the existing recipes store genomes in an uncompressed form. My concern is that, with…
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I have 5 mammalian genomes that I am trying to align using progressiveCactus.
When I try to run all 5, it takes months on my limited available computational resources.
However, I managed to run 2 of…
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It would be cool to get a function that returns double table from the genome like this:
virtual vector readTable(pair tableSize, pair tableMaxSize, pair valueRange, int code = -1, int Coding…
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This is a thread to discuss how to build genome graphs with haplotypes that preserve the privacy of the genomes that the graphs were built from.
As a test data set, I downloaded a piece of chr20 fo…
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I operate according to the protocol, but there is an error, can someone kindly help me to solve it
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It lasted quiet a long time and didn't generate new files. I am wondering how long does it take.
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## Background
One of the goals of this application was to be able to adapt to different genome types other than sars, which is linear single stranded RNA.
## Can be closed when
- [ ] Distance m…
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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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Hello,
first sample was done very well, but my second sample is stucking. My shell output is the following:
-1 SID16126_S10_L001_R1_001.fastq.gz -2 SID16126_S10_L001_R2_001.fastq.gz
[Wed 2022-0…
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Hi! I want to build a reference ctat-genome-lib using the genecode version 36. I was wondering if I can download the `GRCh38_gencode_v33_CTAT_lib_Apr062020.source` folder and then run the following co…