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Hello!
In the paper, it is mentioned that "The current best assembly spans 15.34 Gbp, while the GenomeScope estimate is 14.1 Gbp (see Supplementary Figs. 21 and 22)". Fig. S21, GenomeScope estimate…
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### Description of feature
Prompted by the strategy presented in https://www.biorxiv.org/content/10.1101/2022.10.03.510579v1 it would be an interesting general strategy to add a post-profiling step t…
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### Description of the bug
On my university's cluster, users are penalized (with priority reduction) for requesting more RAM than they actually use. So the fact that the pipeline requires at least 72…
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This is a request to update the "genome coverage" [[OBI:0001939](http://purl.obolibrary.org/obo/OBI_0001939)]
**New parent term:** sequence data [[OBI:0000973](http://purl.obolibrary.org/obo/OBI_00…
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There seems to be a large KP.3.1.1+S:S31F branch, while KP.3.1.1 shall have S:31del.
That branch is driven by Denmark seqs which do not handle S:S31del well. When Querying C12616T, A13121T, C2165…
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## Where
`disciplines/Pharmacogenomics/Data_Processing/RNAseq_raw_processing.md`
## Contents
- [ ] All content from https://collaborate.uhnresearch.ca/confluence/display/BHKLabPRC/RNA+seq+raw+pro…
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**Describe the issue**
Trying to run the LTR Pipeline alone to add to some libraries and then re-mask some genomes. So far, this is only happening with one genome. I use the -LTRStruc flag for Repe…
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I operate according to the protocol, but there is an error, can someone kindly help me to solve it
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Hello!
First of all, thank you for creating this wonderful R package 😊.
I have fitted the following psem, which consists of a list of phylogenetic least squared models (gls):
psem(gls(genome_…
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Hi,
Thanks for developing state-of-the-art technology for prophage detection.
I have a strange bacterial genomes which have a variety of mobile genetic element in their genome, so I want to custom…