-
Hi,
I am aware that title of the post is an duplicate but neither #192 and #446 solved my problem. As you have commented in my previous threads, I was Ok with running Canu in our system. However, I…
-
Hi,
I am trying to run CANU 1.6 on a large genome (2.5 gb) with ~58x Sequel data. I am facing problem at correction stage.
Could figure out why it is failing repeated several times. CANU failed at …
-
Hi I am using Canu 1.6 on a remote cluster with SGE resources. I have no problem running Canu without using SGE.
The problem rises when I try to use SGE resource:
* firstly, Canu can't configure…
-
I've been trying to run Canu on ~ 30X nanopore 1D reads for a ~ 30Mb genome for the past month, I've encountered several problems. The reads are on the shorter end, i.e. lots of the data is < 1 kb. …
-
Hi,
I've spent quite some time in trying to find the right parameters to run Canu on LSF. I thought I finally had all the parameters (such as mhapThreads, corMemory, etc) such that Canu would run (ha…
-
CC @thegenemyers, @richarddurbin, @ekg, @rrwick, @sjackman, @jts, @pb-jchin, @skoren, @aphillippy, @MihaiPop, @ggonnella, @pmelsted, @edawson
## The current status of GFA1
There were two general-purp…
-
I'm going to extend vg to read overlap graphs. This would be easiest if we actually add support for manipulating them, such as via the protobuf schema. I don't think anything serious needs to change, …
-
Hi,
the pats in the gfa1 dumped by graphdump seem to have a wrong format. For some of the segments in the path the the orientation is missing and for all segments that have one the orientation is g…
-
I'm having a problem running canu release 1.5. The command used is `canu -d /rsgrps/rwing/canu_assemblies/coarctata -p coarall corMhapSensitivity=normal corOutCoverage=200 "batOptions=-dg 3 -db 3 -dr …
-
Hello,
I got canu to work successfully, have all my outfiles, but now really have trouble understanding what it all means. I am also very new to all the terminology and how I can visualize such gfa…