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medvedevgroup
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TwoPaCo
A fast constructor of the compressed de Bruijn graph from many genomes
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latest LLVM will not compile TwoPaCo
#33
dslarm
opened
1 month ago
0
Fix error handling
#32
iminkin
opened
10 months ago
0
Fail to install TwoPaCo
#31
Dominic7227
opened
1 year ago
1
Present API for pufferfish
#30
merkys
opened
2 years ago
1
changes to support an updated TBB
#29
dpryan79
closed
2 years ago
2
Fails to build with TBB 2021.5.0
#28
merkys
closed
2 years ago
4
Cause of input corrupted error?
#27
rickbeeloo
opened
2 years ago
1
Is it stuck when there is really low CPU usage?
#26
rickbeeloo
opened
4 years ago
3
Confused about + and - stranded nodes in GFA
#25
rickbeeloo
opened
4 years ago
5
meaning of software name
#24
ekg
opened
4 years ago
3
Creation of many temporary files (of considerable size) when there are many references.
#23
rob-p
closed
4 years ago
4
typo?
#22
dombraccia
opened
5 years ago
0
`twopaco` and `graphdump` functions not found
#21
dombraccia
closed
5 years ago
1
undefined reference to `__cxa_init_primary_exception@CXXABI_1.3.11'
#20
fishextinction
opened
5 years ago
3
Undefined symbol
#19
dwightkuo
closed
5 years ago
2
graphdump now outputs a specialized gfa called Pufferized
#18
fataltes
opened
6 years ago
0
target not created
#17
shivamjawahar
closed
6 years ago
0
MAC OS compilation failed
#16
ShreyasChikkabilathiHarisha
closed
6 years ago
3
Replace deprecated auto_ptr
#15
iminkin
closed
6 years ago
0
enable build on g++ 5.4.0
#14
ekg
closed
6 years ago
0
Linking twopaco to TBB fails
#13
OliverS87
closed
7 years ago
4
Problem building TwoPaCo in BioLinux
#12
jflot
closed
7 years ago
4
Redundant k-mer in contigs
#11
rob-p
opened
7 years ago
8
Question about GFA format
#10
rob-p
opened
7 years ago
3
Corrupt input when using graphdump on TwoPaCo output
#9
rob-p
closed
7 years ago
5
gfa1 Format issue (path orientation)
#8
ChriKub
closed
7 years ago
2
Unable to create temp file
#7
ChriKub
closed
7 years ago
6
Handeling N characters in sequences
#6
ChriKub
closed
7 years ago
1
error: Inconsistent read size
#5
ChriKub
closed
7 years ago
3
Large k value
#4
Malfoy
closed
7 years ago
8
GFA version update
#3
ChriKub
closed
7 years ago
3
Refactor parallel section
#2
iminkin
closed
7 years ago
0
Implement two pass aggregation strategy
#1
iminkin
closed
7 years ago
0