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**Describe the bug**
When I attempt to run "peak_calling", I encounter an error, which I believe is related to numpy. I installed scenicplus using Python 3.11 following the instructions on the websit…
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**Snakemake version**
6.6.1 and 6.7.0
**Describe the bug**
When attempting to execute workflows with rules that use a snakemake wrapper, the jobs themselves (running on the cluster nodes)…
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**Issue by [jachym](https://github.com/jachym)**
_Thursday Sep 24, 2015 at 08:45 GMT_
_Originally opened as https://github.com/PyWPS/pywps-4/issues/69_
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Each process execute method should get pr…
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> I would like to configure Azure to use their infiniband nodes. Someone from Azure has given me a custom CentOS7 image that has the infiniband support baked in. I tested it and things seem to work fi…
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I have installed `sra-tools` v3.0.10 distributed from Bioconda for **linux-64** platform. Running `fasterq-dump` occupies far more RAM than the flags would imply (default 100 MB/core) or I have ever e…
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Hi, I have recently been running the all2all benchmarks on Perlmutter supercomputer cluster. One thing I found strange is if I use
`salloc --nodes n -qos regular -constraint gpu --gpus-per-node 4`…
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Hi, I wanted to report an issue when running `nanodisco difference`, which appears related to #18. We have a large compute node on a SLURM cluster with 72 cores and 2TB memory. When allocating 24 cor…
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Hello,
I ran the test data in the login node of HPC cluster:
```
nextflow run /public/home/zyqi/pan-TE-analysis/GraffiTE/GraffiTE/main.nf \
--assemblies assemblies.csv \
--TE_library huma…
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### Description
Perhaps because of Tiny CA blog post there has been discussions github about the use of SSH certificates, for windows and posix-like OSes. I've been describing more or less how step…