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Hello,
It would be really great to have the following tests in Hail, as detailed on EPACTS: http://genome.sph.umich.edu/wiki/EPACTS#Single_Variant_Test
Most important for immediate analyses (with ~1…
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Hi,
I've been using GEMMA to run a linear mixed model on separate mouse populations with success. I'm now interested in running a mega-analysis including two major mouse populations, and I intend …
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...once KinshipMatrix is in, with RRM going there.
The current export to file formats on GRM should be moved to KinshipMatrix too.
And then doc on lmmreg should be updated to reflect there are m…
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Which datasets, rules, settings, hyperparameter ranges, hyperparam. search methods etc. ?
IIRC @tdmeeste was looking into datasets and rules (especially some criterion for generating/selecting the …
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While parsing through a ton of files the error above was triggered. Here are the full contents of the error:
```
/Users/benjamin/Work/Awesome Motive/Optin Monster/git/optin-monster-app-kinship/no…
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The latest update (20161018) available here, now sends an error when trying to generate kinship while including the ped file.
When running the following command:
../executable/vcf2kinship --inVcf …
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- [x] Angmar
- [x] Arnor
- [x] Dol Guldur
- [x] Eregion
- [x] Gondor
- [x] Harad
- [x] Isengard
- [x] Lindon
- [x] Lothlorien
- [x] Minas Morgul
- [x] Mirkwood
- [x] Mordor
- [x] Numenor
…
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Issue came up on doctest branch.
Reproducible example:
```
assoc_vds = hc.import_vcf('src/test/resources/sample.vcf')
.split_multi()
.variant_qc()
.annotate_samples_expr('sa.culprit = gs…
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### vaporfaerie
Level 5 Animal Kinship claims you can massage butterflies without butterfly lotion, but that's not the case. I know, small-small-tiny bug report, but I figured y'all might wanna know.…
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This is a proposed anomaly.
It would only occur on Frozen planets.
Upon discovery:
**Strange Lights**
_“At night time on [Planet Name], a massive glowing light can be seen under the transparent surf…