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Hi,
I want to use Open search or Mass offset search to process some Lable-free data, I have some troubles after loading the default workflow, the following is my error:
```
did not find any Pep…
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I have a `.d` directory with `.u2` file (attached) which supposed to contain PDA spectra, at least according to [the docs](https://usermanual.wiki/m/2ca13700a79ebe1fc317c4a588f9ca7222ad1bd8ed2fdb9608f…
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Peaks, scans and other input types are supported already. Additionally support mass spectral data.
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/RforMassSpectrometry/MsExperiment/
Confirm the f…
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- Describe the issue or question:
Hi, I got an error when running DIA runs of peptidomics.
Below is the error:
System OS: Windows 10, Architecture: AMD64
Java Info: 11.0.9.1, OpenJDK 64-Bit Server…
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Tide-index generated decoy peptides with the following parameter:
--decoy-format none --allow-dups T
Note that: Tide index should have not generated decoy peptides.
But it does not generate decoy…
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The current implementation of ``calc_scores.calculate`` is deliberately naive while we are sorting out the refactored skeleton of ``matchms``:
https://github.com/matchms/matchms/blob/672cbbc17169e…
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### Description of feature
DIA-NN results are not only exported to MSstats, we need to be able to export the results to mzTab.
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Dear Vadim,
we are currently in the process of setting up new DIA-based workflows currently using 1.7.10. One aim is to also use it for SILAC experiments. I went trough the manual and as far as I u…
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Hello,
I am also having a problem running MSFrager as a PD node. I have the same error message as was posted on other topics
![image](https://user-images.githubusercontent.com/109969166/184860614…