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Hi Yoshitaka-san,
I tried running AF2_Advanced on these two files separately:
```
>HHAWx4
HHAWHHAWHHAWHHAW
```
And
```
>KKAWx4
KKAWKKAWKKAWKKAW
```
It gave me the following error…
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Hi! TheAF2/mmseqs presents a warning and error (see below) after upload of seq:seq just as in the instructions for a homooligomer followed by Run all.
WARNING: Skipping colabfold as it is not install…
cajje updated
2 years ago
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I know the pTM is printed to stdout during a run... but is there anywhere the pTM per model is stored post-run?
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Hello,
I would like to build a pipeline to search MSAs using local MMSeqs. However, There are some problems when I fllow the script 'msa.sh' returned from online MMSeqs service. For examle, when I ru…
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Hi,
Thanks for sharing the powerful tool.
I'm running Alphafold on a computer cluster, I wanted to make a PAE plot like those shown on Alphafold database and colab results. Where are these PAE data?…
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## Expected Behavior
createindex creates the index .
## Current Behavior
createindex crashes when indexing a ~150gb nucl. DB
## Steps to Reproduce (for bugs)
`mmseqs createdb ./cated_sk100_reps.…
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Hello,
I am trying to cluster some nucleotide sequences that are circularly permuted. To this end, I am calling `--wrapped-scoring 1` but am encountering a problem (that does not happen when `--wr…
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Hi, I've processed some data for training but get the bug of dataloader of:
`File "/share/home/openfold/openfold-main/lib/conda/envs/openfold_venv/lib/python3.7/site-packages/pytorch_lightning/util…
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If I want to use SemiBin, GUNC and GTDB-tk.
I would need to download three times slightly different versions of GTDB. Do you think there could be a way to simplify this?
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For training use ColabFold pipeline (and templates with HHsearch), there is a path **template_mmcif_dir**.
Should it be something like **data/pdb_mmcif/mmcif_files/** or other precomputed folders？