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https://sdsc.zendesk.com/agent/tickets/29944
https://sdsc.zendesk.com/agent/tickets/26289
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**Submitting author:** @wrightaprilm (April Wright)
**Repository:** https://github.com/wrightaprilm/treesiftr
**Version:** v1.0.0
**Editor:** @juanklopper
**Reviewer:** @ethanwhite, @rachelss
**Archiv…
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~~ Select the alignment given ID (e.g. random variable name) in the LPhy script. ~~
Update to use the 2nd lphy script to simulate data
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The example below creates a simulation with a rotated gravity vector, a background buoyancy field that's just a stratified background with linear stratification and it starts everything off with some …
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Hello, thanks a lot for sharing your work!
I was wondering whether you could provide any relevant literature regarding the `hashimoto_filter` available in general filters? I could not find any info…
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Hello,
If you are given a 3D structure solved experimentally (e.g. in the PDB).
Can't you use that to improve your predictions?
With a structure, we will know which AAs are buried and which
have…
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Given the scale of potential variation, to what extent can protein-specific models of functional impact be used as evidence?
I've been developing a method to predict functional changes of missense…
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I had intended to perform an accelerated molecular dynamics (aMD) simulation on a short peptide to analyze its folding process into a helix using the Enhanced Sampler Section. However, I encountered m…