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Example 1, clr4 https://www.pombase.org/gene/SPBC428.08c
has substrate hht1/InitMet-/Ubiq:(K14)
here we display and link to only the modified form.
We also need a link that goes directly …
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# If your bug report is about Mondo, please file a ticket here instead: https://github.com/monarch-initiative/mondo/issues
## Describe the problem with the Monarch website or APIs
I'm wondering …
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Hi all,
I'm new to using CellphoneDB and have been encountering issues when running the command "cellphonedb method statistical_analysis --counts-data=hgnc_symbol d197_kidney_meta.txt d197_kidney_n…
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Using the same ortholog calls as used for japonicus, add japonicus orthologs to PomBase ortholog section.
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These SGD IDs aren't loading for SPAC869.07c in chromosome1.contig:
FT /controlled_curation="term=orthologous to S. cerevisiae …
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* **PTHR ID & PTN node:**
GO:0050684 | regulation of mRNA processing | IBA with S000003348 , MGI:107726 , PTN000015765
Spt6 is a histone chaperone, involved in transcriptional chromatin assembly…
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Hello,
Thank you for the tool I have successfully run the OrthoFinder. My main objective is to find the orthologs and paralogs(species specific) I need a gene IDs, which file will provide me detail…
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For matrices and other tabular data, offer a function to aggregate rows from duplicate genes.
Duplicate genes can be generated from non-1:1 orthologs in `convert_orthologs`, or from gene synonyms in …
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Can use Compara + any transfer human ortholog of a pombe ortholog
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http://japonicusdb.kmr.nz/gene/SJAG_07017
Does not have human ortholog
I'm not sure why as I'm assuming these are pulled through to japonicDB from the pomb-human connection?