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There may be an FK.1 sublineage with ORF1b:L2580I (NSP16:L183I, C21205A), ORF1a:A1060T (NSP3:A242T; G3443A), and synonymous nucleotide mutations T1465C, C18657T, A23416T, and C27804T first detected in…
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I put here cause i think it is worth not losing memory of it, unsure if it deserves an ex post designation, ex post because its circulation was at very low levels in 2023.
Still i i think it is inter…
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Continuing my exploration of potentially artefacty lineages (started in #1029 and continued in #1038), I noticed that BA.5.1.15 was based on sequences from just two labs in two disjoint countries (Bra…
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### Current Behavior
Currently both osx and linux lockfiles install IQtree v1.6.
One way we could end up with lower versions is if a package moved from conda-forge to bioconda. Then we're stuck …
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Hi there,
I just ran an analysis and came across a case of BQ.1.13.1. This lineage is not to find in the annotation-json file.
Greets
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Just a ping to @corneliusroemer for next designathlon :
in FL.4 there is a quite big indonesian only sublineage with S:T478R without any nuc mutations from the politomy.
I Think it is easier just p…
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Lineage BE.9 contains a huge deletion 27508-27751del. The Brazilian bioinformatics pipelines have had issues with this, producing the erroneous substitutions A27508C and A27749G. Since the lineage aro…
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BQ.1 appears to be fast growing. Some Spike mutations are showing up repeatedly, but it's too early to designate sublineages other than BQ.1.1 for them at this point. I think it reduces noise to track…
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Hi thanks for your great work.
I would suggest if it is possible to add at the start of the table before ( = at the left of) the ID Column a PINNED row with fix numbers from 1 to X to easily count nu…
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Here i want to propose a CM.8.1 sublineage that appeared first in phillipines and has been exported fastly in several countries.
I was digging a bit samples from Philippines or travel realted with Ph…