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Hi,
We need to check the results of the prediction.
@keuv-grvl, @ylana Any idea how to do that?
Some ideas:
- Compare the predicted PYL proteins for the genomes in `data` to the PYL protein…
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Hi,
I've been reading the section on improving the target file using fix_targetfile option by removing low complexity regions. I noticed that using this option is messing up with the fasta file hea…
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Dear developers,
Can *VeryFastTree* handle a modified alphabet rather than either nucleotide or amino acid alphabets?
If yes, how can it be performed?
Thanks in advance.
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MGCCGCGSCGCSGG\***GGGCGGGCGGGCGSCTTCR**CYRVGCCSSCCPCCRGCCGGCCSTPV
MGCCGCGSCGGCGGRCGGGCGGGCSGGCGGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPC
MGCCGCGSCGGCGGGCGGCGGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCC
Comet i…
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## Metadata
|key|value|
|--|--|
|**version**|0.2.2|
|**cuda**|True|
## Parameter
|key|value|
|--|--|
type|embed
protocol|prottrans_t5_xl_u50
half_precision_model|True
half_precision|True
…
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I want to predict the structure of a complex of 2 proteins, what linker should I use.
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The idea is to allow a user to write their own export class if they have a different version of GFF3, Chado, etc. and then have that available the Sequence Panel.
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When parsing example file https://github.com/HUPO-PSI/mzIdentML/blob/master/examples/1_2examples/crosslinking/xiFDR-CrossLinkExample.mzid, I find these 2 protein entries as DBSequence elements:
```
…
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Hi,
I'm encountering an error while trying to run dbCAN, and it appears to be related to the output generation. Any assistance you could provide would be greatly appreciated.
I've installed dbca…
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run_disopred.pl fails for the three titin variants A2ASS6, E9Q8K5, and E9Q8N1 (uniprot accession codes). These are very long sequences, >30000 aa. No non-standard amino acids can be found in the seque…