HUPO-PSI mzIdentML issues

HUPO-PSI / mzIdentML

Repository for mzIdentML and the corresponding examples

23 stars 24 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

section 7.4 mistakenly refers to <SpectrumDetectionProtocol> instead of <SpectrumIdentificationProtocol>

#147 colin-combe opened 4 months ago
0
update 1.3 from draft to final

#146 colin-combe closed 5 months ago
0
update with responses to 1.3.0 reviews

#145 colin-combe closed 6 months ago
0
Update SIR m/z for multiple_spectra_per_id_1_3_0_draft.mzid

#144 lutzfischer closed 7 months ago
0
Examples using non-exported Unimod crosslink mods

#143 chambm opened 9 months ago
3
minor revisions to crosslinking ext doc

#142 colin-combe closed 9 months ago
3
V1.2.0 de novo sequence representation

#141 rzhang90 opened 10 months ago
10
Bump commons-text from 1.7 to 1.10.0 in /validator/trunk

#140 dependabot[bot] opened 1 year ago
0
mistake in SpectraDataType definition in .xsd? (missing FileFormat?)

#139 colin-combe closed 1 year ago
3
1.3.0 crosslinking examples

#138 colin-combe closed 1 year ago
3
Section 5.2.7 example (names and values reversed in CV terms)

#137 colin-combe opened 1 year ago
2
XML fragment in 7.5 (p.91) shows PeptideEvidence in wrong place?

#136 colin-combe closed 4 months ago
0
example CV terms in ProteinDetectionHypothesis

#135 colin-combe closed 4 months ago
2
incorrect example cvParams given for DatabaseName (6.20)

#134 colin-combe closed 4 months ago
0
question/comment about mzIdentML1.2.1-draft.docx

#133 colin-combe closed 1 year ago
0
example CV params for SpecificityRules

#132 colin-combe closed 4 months ago
0
cv mapping rules for Threshold?

#131 colin-combe closed 4 months ago
4
1.2.0 spec doc refers to nonexistent sections of itself?

#130 colin-combe closed 4 months ago
2
file format for extension documents?

#129 colin-combe closed 1 year ago
4
current correct way to encode the ion series searched for

#128 colin-combe opened 2 years ago
5
SearchModification MAY supply a *child* term of MS:1001471 (peptide modification details) only once?

#127 colin-combe closed 4 months ago
2
Xlmod submodule

#125 mwalzer opened 2 years ago
4
Bump xercesImpl from 2.12.0 to 2.12.2 in /validator/trunk

#120 dependabot[bot] closed 2 years ago
0
Add obofoundry topic to repo metadata

#119 cthoyt closed 1 year ago
2
XLMOD: Updated version and fixed OBO errors

#118 pmt706 closed 3 years ago
3
Provide an OWL version xlmod?

#117 matentzn closed 2 years ago
14
2 missing double quotes in XLMOD.obo

#116 rfellers closed 2 years ago
0
XLMOD:02258 has malformed spaceLength value

#114 mobiusklein opened 4 years ago
0
Mod scores - problem reporting a combined score for multiple sites

#112 andrewrobertjones opened 5 years ago
1
can't launch the validator

#111 prvst closed 2 years ago
12
Cardinality of paramGroup for ProteinDetectionList in mzIdent1.2

#109 germa opened 6 years ago
0
Spec doc problem on SearchDatabase

#108 andrewrobertjones closed 6 years ago
2
SoftwareName cannot be valid with "custom unreleased software"

#107 mobiusklein closed 6 years ago
4
validator gives different results second time its run

#106 colin-combe closed 6 years ago
2
Validator passes four MS:1002511 with the same 'value' within single SIR? [EDIT - this is correct]

#105 colin-combe closed 6 years ago
3
SIM-XL_example.mzid

#104 colin-combe closed 6 years ago
1
validator check for start and end att's of PeptideEvidence

#103 colin-combe closed 6 years ago
2
Peptide <-> PeptideEvidence relationship - is this valid?

#102 colin-combe closed 6 years ago
3
AnalysisSampleCollection

#101 germa opened 6 years ago
2
Redundancy of cross-links in the <Peptide> element

#100 mhoopmann closed 6 years ago
15
Unanticipated CV terms from validator

#98 UKQIDA closed 6 years ago
1
Validator bugs on Peaks mzid file

#97 UKQIDA closed 6 years ago
1
Exporting Crosslink Modifications

#96 ciesinsk closed 6 years ago
7
Exception thrown at launch in version 1.4.27

#95 mesontau closed 7 years ago
5
validator error that is not correct

#94 smdb21 closed 2 years ago
0
Bugs in MzIdentML validator

#93 UKQIDA closed 6 years ago
2
XLMOD obo contains invalid property_value CID fragment

#92 lutzfischer closed 6 years ago
1
accession attribute in DBSequence should be unique?

#91 smdb21 opened 7 years ago
11
SpectrumIdentificationProtocol in mzid 1.2

#90 UKQIDA closed 2 years ago
1
cvParam's with empty accession

#89 germa opened 7 years ago
0