HUPO-PSI mzIdentML issues

HUPO-PSI / mzIdentML

Repository for mzIdentML and the corresponding examples

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section 7.4 mistakenly refers to <SpectrumDetectionProtocol> instead of <SpectrumIdentificationProtocol>

#147 colin-combe opened 2 months ago
0
update 1.3 from draft to final

#146 colin-combe closed 3 months ago
0
update with responses to 1.3.0 reviews

#145 colin-combe closed 4 months ago
0
Update SIR m/z for multiple_spectra_per_id_1_3_0_draft.mzid

#144 lutzfischer closed 5 months ago
0
Examples using non-exported Unimod crosslink mods

#143 chambm opened 7 months ago
3
minor revisions to crosslinking ext doc

#142 colin-combe closed 8 months ago
3
V1.2.0 de novo sequence representation

#141 rzhang90 opened 8 months ago
10
Bump commons-text from 1.7 to 1.10.0 in /validator/trunk

#140 dependabot[bot] opened 1 year ago
0
mistake in SpectraDataType definition in .xsd? (missing FileFormat?)

#139 colin-combe closed 1 year ago
3
1.3.0 crosslinking examples

#138 colin-combe closed 1 year ago
3
Section 5.2.7 example (names and values reversed in CV terms)

#137 colin-combe opened 1 year ago
2
XML fragment in 7.5 (p.91) shows PeptideEvidence in wrong place?

#136 colin-combe closed 2 months ago
0
example CV terms in ProteinDetectionHypothesis

#135 colin-combe closed 2 months ago
2
incorrect example cvParams given for DatabaseName (6.20)

#134 colin-combe closed 2 months ago
0
question/comment about mzIdentML1.2.1-draft.docx

#133 colin-combe closed 1 year ago
0
example CV params for SpecificityRules

#132 colin-combe closed 2 months ago
0
cv mapping rules for Threshold?

#131 colin-combe closed 2 months ago
4
1.2.0 spec doc refers to nonexistent sections of itself?

#130 colin-combe closed 2 months ago
2
file format for extension documents?

#129 colin-combe closed 1 year ago
4
current correct way to encode the ion series searched for

#128 colin-combe opened 2 years ago
5
SearchModification MAY supply a *child* term of MS:1001471 (peptide modification details) only once?

#127 colin-combe closed 2 months ago
2
Xlmod submodule

#125 mwalzer opened 2 years ago
4
Bump xercesImpl from 2.12.0 to 2.12.2 in /validator/trunk

#120 dependabot[bot] closed 2 years ago
0
Add obofoundry topic to repo metadata

#119 cthoyt closed 11 months ago
2
XLMOD: Updated version and fixed OBO errors

#118 pmt706 closed 3 years ago
3
Provide an OWL version xlmod?

#117 matentzn closed 2 years ago
14
2 missing double quotes in XLMOD.obo

#116 rfellers closed 2 years ago
0
XLMOD:02258 has malformed spaceLength value

#114 mobiusklein opened 4 years ago
0
Mod scores - problem reporting a combined score for multiple sites

#112 andrewrobertjones opened 5 years ago
1
can't launch the validator

#111 prvst closed 1 year ago
12
Cardinality of paramGroup for ProteinDetectionList in mzIdent1.2

#109 germa opened 6 years ago
0
Spec doc problem on SearchDatabase

#108 andrewrobertjones closed 6 years ago
2
SoftwareName cannot be valid with "custom unreleased software"

#107 mobiusklein closed 5 years ago
4
validator gives different results second time its run

#106 colin-combe closed 6 years ago
2
Validator passes four MS:1002511 with the same 'value' within single SIR? [EDIT - this is correct]

#105 colin-combe closed 5 years ago
3
SIM-XL_example.mzid

#104 colin-combe closed 6 years ago
1
validator check for start and end att's of PeptideEvidence

#103 colin-combe closed 6 years ago
2
Peptide <-> PeptideEvidence relationship - is this valid?

#102 colin-combe closed 5 years ago
3
AnalysisSampleCollection

#101 germa opened 6 years ago
2
Redundancy of cross-links in the <Peptide> element

#100 mhoopmann closed 5 years ago
15
Unanticipated CV terms from validator

#98 UKQIDA closed 6 years ago
1
Validator bugs on Peaks mzid file

#97 UKQIDA closed 6 years ago
1
Exporting Crosslink Modifications

#96 ciesinsk closed 6 years ago
7
Exception thrown at launch in version 1.4.27

#95 mesontau closed 7 years ago
5
validator error that is not correct

#94 smdb21 closed 1 year ago
0
Bugs in MzIdentML validator

#93 UKQIDA closed 6 years ago
2
XLMOD obo contains invalid property_value CID fragment

#92 lutzfischer closed 6 years ago
1
accession attribute in DBSequence should be unique?

#91 smdb21 opened 7 years ago
11
SpectrumIdentificationProtocol in mzid 1.2

#90 UKQIDA closed 1 year ago
1
cvParam's with empty accession

#89 germa opened 7 years ago
0