-
@flying-sheep
Just found this issue for pandas https://github.com/pandas-dev/pandas/issues/21653, and looked at the code for `is_string_dtype` and think it probably shouldn't be relied on. Anythin…
-
Dear developer:
Due to the requirement of SEVtras to save the `adata` as` adata.raw` before any filtering and normalization steps, which differs from the standard Scanpy workflow that saves `adata` a…
-
I'm trying to do bbknn with my own single-cell data and demo data, but kernals died every time when I doing whatever my own data or demo data.
Is this because of my device? or?
sc.settings.verbosi…
-
**What type of problem are you experiencing and which function is you problem related too**
My run_scenicplus step failed to complete, specifically when eGRN AUCs are binarized. The error is seemingl…
-
### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (op…
-
With large Anndata objects, I sometimes want check the attributes present. The print/repr call does this okay, but becomes hard to read with highly populated objects and not possible to compared two o…
-
Hello
I would like to use this nice tool for my 10X visium samples. I followed most of the tutorials and prepared my custom data for the analysis in NCEM . Everything works fine. But I can not se…
-
### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [X] (option…
-
Thanks a lot
urget help needed
**Describe the bug**
A clear and concise description of what the bug is.
> Mote that most *errors* are due to the input from the user, and therefore should be tr…
-
Hi!
I followed this tutorial [scvi-hugging-face](https://colab.research.google.com/github/scverse/scvi-tutorials/blob/1.0.4/hub/scvi_hub_intro_and_download.ipynb#scrollTo=89938623) to load pre-trai…