Teichlab bbknn issues - Githubissues

Teichlab / bbknn

Batch balanced KNN

MIT License

149 stars 25 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

error in import of DistanceMetric

#62 mahogny opened 1 month ago
1
BBKNN for ATAC data

#61 wlason opened 4 months ago
1
kernals died when using bbknn

#60 FessenSimon closed 5 months ago
2
Update on bioconda

#59 benjamin-james closed 11 months ago
2
np.matrix and ridge_regression

#58 maryellenlynall closed 1 year ago
5
Enable Faiss with GPU support.

#57 canergen closed 1 year ago
3
use `sklearn.neighbors.DistanceMetric` instead of `sklearn.neighbors.DistanceMetric`

#56 ryan-williams closed 1 year ago
0
Fix `ImportError` for `scikit_learn` >=1.0.0

#55 matchy233 closed 1 year ago
0
`ImportError` for `scikit_learn` >= 1.0.0

#54 matchy233 closed 1 year ago
9
error during ridge_regression

#53 JuliaChristiaanse closed 1 year ago
2
BBKNN incompatible with 'x86_64', need 'arm64e'

#52 Shaun-Regenbaum opened 1 year ago
3
Query cells together

#51 ChuanXu1 closed 2 years ago
1
Issues importing bbknn after successful install

#50 ngolan1 closed 3 years ago
0
Feature/parallel graphs

#49 ghost closed 3 years ago
0
ValueError: No hyperplanes of adequate size were found! When not using annoy

#48 mtvector opened 3 years ago
5
Performace varied on different operating systems

#47 cquzys closed 3 years ago
2
Removing multiple covariates during integration

#46 connorhknight closed 3 years ago
1
Export BBKNN results to R software

#45 edroaldo closed 3 years ago
1
incompatible with annoy==1.17.0 ?

#44 zktuong opened 3 years ago
1
Does bbknn really work?

#43 HelloWorldLTY closed 3 years ago
4
problem : name 'logg' is not defined

#42 ahmedibatta closed 3 years ago
3
`n_trees` is now `annoy_n_trees`

#41 ghost closed 3 years ago
3
considering using `pynndescent` for appox nn search?

#40 giovp closed 3 years ago
4
neighbors_within_batch argument usage in R?

#39 rwelling520 closed 3 years ago
4
KeyError: 'connectivities' while running running UMAP function

#38 aditisk closed 3 years ago
1
add initial distance matrix work

#37 olgabot opened 3 years ago
0
Add cosine distance as valid metric

#36 olgabot opened 3 years ago
4
Black formatting

#35 olgabot opened 3 years ago
0
An error when running bbknn$bbknn(adata,batch_key=0)

#34 Zhaohui-Ruan opened 3 years ago
0
Details for pbmc dataset used #30

#33 mohit1997 closed 3 years ago
1
IndexError: index 2 is out of bounds for axis 0 with size 2

#32 brianpenghe closed 3 years ago
2
TypeError: info() got an unexpected keyword argument 'r

#31 AkiraNom closed 4 years ago
1
Details for pbmc dataset used

#30 mohit1997 closed 4 years ago
2
bbknn spark error when runing with data integrated from scRNA data

#29 honghh2018 closed 4 years ago
1
umap error after package updates

#28 PaulingLiu closed 4 years ago
1
Please also require packaging in setup.py

#27 jenzopr closed 4 years ago
2
scanpy update incompatibility

#26 bjstewart1 closed 4 years ago
1
should change location of 'distances' and 'connectivities' for new versions of anndata

#25 alasla closed 4 years ago
10
X_umap_3D

#24 JBreunig closed 4 years ago
1
"sklearn" as a dependency

#23 deto closed 4 years ago
1
make connectivity compatible with umap learn 0.4

#22 iandriver closed 4 years ago
1
ModuleNotFoundError

#21 mvfki closed 4 years ago
1
Allow usage of other embeddings

#20 dawe closed 4 years ago
2
Understanding `neighbors_within_batch` parameter?

#19 chris-rands closed 4 years ago
1
Correcting for more than 1 covariate using BBKNN

#18 dnehar closed 5 years ago
1
Collaboration

#17 jumphone closed 4 years ago
0
scanpy logging: warn -> warning

#16 fbnrst closed 5 years ago
1
Logging error

#15 ivirshup closed 5 years ago
6
Throwing exceptions with logg.info() arguments.

#14 milescsmith closed 5 years ago
2
Update access of obsm keys

#13 ivirshup closed 5 years ago
3