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**Snakemake version:** 5.29.0
**Describe the bug**
If the input files are retrieved with a function, snakemake will ignore the ancient flag and always execute a rule if the input is newer than…
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**Snakemake version**
5.7.1
**Describe the bug**
When executing a rule targeting a Rmarkdown file, the command fails because the package `rmarkdown` cannot be loaded. This happens because `rm…
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**Snakemake version**
Stable release of wrappers - `0.66.0`
**Describe the bug**
When viewing the documentation on readthedocs, the `stable` tag doesn't show the `code` blocks. Other version …
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Shadow rules result in each execution of the rule to be run in isolated temporary directories. This “shadow” directory contains symlinks to files and directories in the current workdir. This is useful…
verku updated
9 months ago
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**Snakemake version**
Snakemake: 5.19.2
Conda: 4.8.3
Singularity: 3.5.3
Those are installed by `conda create -n pvacseq_msi python=3.7 snakemake=5.19.2 pandas=1.0.1 singularity=3.5.3`
**Descr…
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Hello!
I see that v2.2.0 adds support for compiling on M1/M2 architectures; however, I don't think these have been [added to bioconda](https://anaconda.org/bioconda/cuttlefish) yet. Are there plans…
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Also see #283
**Snakemake version**
5.13
**Describe the bug**
The option `--cores` is mandatory, which is inconsistent with the documentation printed by `--help`.
**Minimal example**
See …
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Building DAG of jobs...
Creating conda environment envs/prodigal.yaml...
Downloading and installing remote packages.
Environment for /home/microviable/Programas/MAGpy/envs/prodigal.yaml created (lo…
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After you comment in the FindFungi repo I looked at your repo's. Interesting work!
Are you working on a web interface for snakemake? For metagenomics data?
What is the relation with the mgms repo?
…
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**Snakemake version**
7.8.0
**Describe the bug**
The documentation of the `--touch` option says:
> `--touch` Touch output files (mark them up to date without really changing them) instead …