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https://rfc80-msk.cbioportal.aws.mskcc.org/study/summary?id=gbc_msk_chile_2021%2Cblca_mskcc_solit_2014%2Cblca_tcga
GRANTED THAT IT SEEMS VERY STRANGE TO NORMALIZE to intitial cap. But we at least…
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Hi,thanks for sharing your great work and it really helps me a lot.I have 2 questions to ask.
First,Your paper discusses experiments with 20×+5× multiscale features, showing promising results. Howe…
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You'll see where getting much greater counts than we should. In fact, when you ADD filter ga filter, the filtered count goes up. This has to be some problem with the intersection of the filters.
`…
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Hi:
I want to use TCGAbiolinks to analyze COAD expression data. Here is what I did.
```r
#Query platform Illunmina hiSeq with a list of barcode
query_Data
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If I have a `data.frame` of copy number data.
```r
> head(copyTableTCGA)
copyTableTCGA..1.. copyTableTCGA..2.. copyTableTCGA..3..
1 CDH13 TCGA-BA-5556 Del
2 …
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Hello!
The paper mentioned that TCGA-NSCLC data was used for validation, which contains a total of 150 samples.
Could you please provide the names of these 150 test samples?
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Hi, is there a way to convert 450k data to beta or pat format?
I am interested in comparing the data from the Nature atlas paper and the data from TCGA 450k array cancer samples for a specific regi…
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- [x] Explore cBioPortal
- [x] See what data is available
- [x] What is their license
- [x] How can we download the data
- [x] etc
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For the data splits of TCGA-CRC, the fold 0 has around 150 samples, while fold 1, 2, 3, 4 have only around 100 samples. Could you please check whether there are some problems with the uploaded data sp…
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I am trying to run histoqc on selected files in a dataset (TCGA Breast) using
python -m histoqc -c /workspace/histoqc_config.ini -n 3 /workspace/tcga_path_histoqc.tsv
where tcga_path_histoqc.ts…