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Hi,
I'm not sure whether CNVkit-RNA, the new functionalities within the software package CNVkit
, could enable copy number inference from **single cell** RNA-sequencing data. Did anybody try this…
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We have generated CNV output from [ControlFreeC](http://boevalab.com/FREEC/) and [CNVKit](https://cnvkit.readthedocs.io/en/stable/), but are seeking individuals to determine consensus focal calls and/…
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Dear doctor Zhu, sorry to disturb you. my master advisor ask me to segment lung nodules/tumors based on LIDC-IDIR database, can you give me some suggestions in pre-processing data and training? many t…
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We're using 2.3, I do think it could be a good thing to try the new version at some point.
Could be related to #388
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Hi Fabian,
Your code for nnunet is awesome.
I want to use Resnet18 as backbone for 2d-UNet.
How can I do so?
Is it possible in nnunet?
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Thank you for your excellent work and interest comments during code. :)When use cascade net in kits, we found similar issue with https://github.com/MIC-DKFZ/nnUNet/issues/45,the performance of cascade…
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Hi, I am running PureCN on cell line whole exome sequencing data with a pool of process matched normals. I am running into some issues with the .vcf files.
SKLMS1.VCF
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since I haven't tracked my PRs with story points.
```
1 AllelicCNV 18-May https://github.com/broadinstitute/gatk-protected/blob/465d9fe90cd26d55cca440e14cbcf5dd9fd50566/src/main/java/org/broadins…
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good morning
my input_shape=(1,240,240,155) (BRATS2018 (240*240*155) i got the following error : ValueError: Operands could not be broadcast together with shapes (128, 60, 60, 40) (128, 60, 60, 39)…
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Guten Abend Fabian:
When following your pipeline I seldom met this trouble: seems like the process is frozen.
Here is the symptom:
It works well when I ran:
`CUDA_VISIBLE_DEVICES=0 OMP_NUM_TH…