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```
As a one way automated copy feature, vcardio could autoimport all vcf
files in a certain predefind directory on start (or better -
periodically).
In conjuction with, for example, swiftp - ftp s…
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**Please contact Lee if you need the VCF files that were attached to this email**
**Note that the db-dir was was used incorrectly**
I fed a vcf created by mutect to oncotator, with only ref_hg in th…
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Explain later. Issue with UCSC VCFs.
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I'm stuck trying to run toil-vg call. I need to set up the per-chromosome GAMs, and I don't see a clear way scripted out in the toil-vg scripts. I'm trying with vg filter and vg chunk.
`vg filter` …
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Hey was curious to know if deletion events will be included when calculation both AF and COV values in VCF? Below is an example where I would probably not call a SNV because of all the indel's found.
…
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### Steps to reproduce
1. Create a vcf file containing the line "BDAY:Jan 1, 1970"
2. Import said VCF file
3. See the "Contacts" app endlessly spin
4. Get the "contacts" request from the web browser v…
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Hey guys, thx very much for your tool!
I just wanted to try it out, because it seems really interesting.
However, I stumbled over the following error when I tried to execute the example workflow:
…
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Hi,
Thank you for developing this tool which is quite easy to use!
I am wondering if SpecHLA could also be used to detect somatic HLA mutations since we have paired tumor and normal WES or RNA…
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Thanks you for this great library.
But I have met some troubles. Could you help me solving it.
I have two vcf file. I want to merge those two into one file.
```
v1 = pysam.VariantFile(vc…
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It would be good to have the complete VCF files available for all the sample sets which would be beneficial. This allows that truth set does not rely on couple of interest sites, but allows for comple…