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Hello,
I am currently using ALDY for genotyping my samples, and I have come across an issue regarding the detection of insertion and deletion variants in the samples. It seems that ALDY is unable t…
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Hi, I've noticed a discrepancy in the window quantification information, where different default window sizes are noted. I have CRISPResso 2.025 installed and it says default window size is 1. However…
bbsos updated
8 months ago
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We have noted a substantial increase the proportion of non-biallelic SNPs across dbSNP 144 and 155 (increased from ~1% to 24%). This is explained in detail [here](https://github.com/neurogenomics/Mung…
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**Title**
Currently no additional mismatch-information is provided for Dpb1 at the position level (MatchingResult.ScoringResult.ScoringResultsByLocus.Dpb1.ScoreDetailsAtPositionOne.IsAntigenMismatch …
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An issue has come up defining phasing of SVs. The SV phasing model needs to define an ordering of phased variants otherwise the haplotype would be ambiguous (e.g. a duplication has two SNPs, one on th…
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Hi, In **mhcflurry**, inappropriate dependency versioning constraints can cause risks.
Below are the dependencies and version constraints that the project is using
```
six
pandas>=0.20.3
tens…
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The bam-readcount output contains allelic read counts on each strand; the readme file provides the following fields for each allele:
```
base:count:avg_mapping_quality:avg_basequality:avg_se_mapp…
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Good day,
Hello I am trying to use the Monoallelic expression, however, I am receiving the this error:
**_too few IDs in DROP_GROUP mae, please ensure that it has at least 1 IDs, groups: []_**
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https://github.com/openvax/mhcflurry/pull/142 updated the YAML loading in the `download` module.
But the training scripts still use `yaml.load` instead of `yaml.safe_load`, e.g.:
https://github.co…