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Dear Jesper
I am interested in using your tool in my research project however I'm having trouble running the examples data.
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(image) razor@razor-IS2323:/media/razor/labdata/Kadu/IMAGE$ per…
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Hello, when I use the scglue.data.lsi, it returned the error: Input contains NaN. Do you know how to figure out it? Thank you.
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I used my own scATAC-seq data from the mouse pbmc to calculate the cell age, and the count was based on mm10. But when it runs, it says
”**please make double sure your ref genome, peak set and cells…
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I’ve seen the code and manual about time course data like
dynamic_ocrs
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I tried to build the docker file (in order to be able to get a singularity image).
The build fails with this error message:
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-…
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Hi, Thank you for your excellent package. I met an issue. When I did coverageplot, I got:
CoveragePlot(
object = dogma_filtered_qc,
region = "S100a8",
features = "S100a8",
expression.assay = "RNA…
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**Describe the bug**
Hi,
for some reason we are getting negative values in the peak column of the narrowPeak file from our data (see image attached). This is probably due to the size of our chromos…
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Hello dev team,
Thanks for the amazing tool. I would like to understand the TFinfo and Base GRN files a little bit better.
The TF info file looks like this: What are these factors_direct and fa…
momur updated
5 months ago
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Hello,
It looks like SELMA has built-in bias score matrices for DNaseI and Tn5, each called by the '-t DATATYPE' flag. Is it possible for the user to generate/use custom bias matrices for other enz…
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Hello!
Thanks again for sharing data and code! Im working through your script to process scATAC-seq fastq files and Im encountering some errors when I trim the demultiplexed fastq files using trim…