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Hi all,
here's information about the deconvolution methods we would like to integrate:
- [x] [Bisque](https://github.com/cozygene/bisque)
- [x] [CIBERSORTx](https://cibersortx.stanford.edu/)
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https://mp.weixin.qq.com/s/AVYCpKVOfQ6eln6XR5EtUQ
ixxmu updated
2 years ago
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Thank you for developing this great software. I run through TRUST4 pipeline on my own bulk rna-seq data and performed some preliminary analysis. Based on the TCR/BCR frequencies, I calculated basic st…
wgmao updated
3 years ago
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https://mp.weixin.qq.com/s/QHt-tV_ohh9C-ibgLaWihQ
ixxmu updated
2 years ago
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Currently we have:
- (Germline) Exomes
- Single-Cell (RNA-seq)
What I see as missing
- Germline Genomes
- Molecular Tumor Conference (WES+RNA-seq)
Follow-up will be to create a ticket to…
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Hello,
First of all would like to say that it has been great ot using Ucell so far. It's implementation is very straightforward and it has nice functionality.
My question relates to the use of d…
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Hi guys,
Kudos for developing this package. I'm really interested to test it on our data. I've had a couple of gos and I'm experiencing some issues though.
I'm looking to determine the cell fract…
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Dear developers,
Can CellphoneDB in principal be applied to bulk rna-seq data? if yes what I should bear in mind for the analysis
Thank you
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https://mp.weixin.qq.com/s/j7I8S6Lu2wZcDlwBKdLZqQ
ixxmu updated
2 years ago
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It seems that `10x immune profiling` should be a child of `Immune Repertoire Deep Sequencing`, or at least there should be some type of directional relationship from the latter to the former.