-
```
What steps will reproduce the problem?
1. Open Beauti
2. Load data.
3. Change to "Trees" panel
4. Change "Tree Prior" to "Speciation: Yule Process"
5. Generate xml file
The resulting xml file wil…
-
```
Currently, BEAUti generates uniform priors between bounds by setting upper and
lower attributes on the parameters. This should change to adding a
element to the priors block so all priors are e…
-
```
Hi Walter,
I have been trying to get BEAST v1.5.1 to work and am having problems. I
have tested it using three .xml files that have all worked fine in v1.4.8.
These three files differ only in th…
-
```
If a tree prior is selected over multiple unlinked trees then for most models a
separate coalescent likelihood is generated for each tree with a shared
coalescent model. For ESB however a multi …
-
```
An unnecessary rate is generated
The non changing clock.rate is in the log
the "constant.popSize" parameter has an operator and is in the prior - wrong
bmPrior="true" - no longer correct, defa…
-
Originally reported on Google Code with ID 409
```
Currently, BEAUti generates uniform priors between bounds by setting upper and lower
attributes on the parameters. This should change to adding a e…
-
```
What steps will reproduce the problem?
1. Open Beauti
2. Load data.
3. Change to "Trees" panel
4. Change "Tree Prior" to "Speciation: Yule Process"
5. Generate xml file
The resulting xml file wil…
-
```
What steps will reproduce the problem?
1. Run the attached XML
What do you see instead?
Parsing XML file: pp.rag.beast2.xml
Read alignment, 'alignment':
Sequences = 9
Sites = 4753
Dataty…
-
```
What steps will reproduce the problem?
1. Open Beauti
2. Load data.
3. Change to "Trees" panel
4. Change "Tree Prior" to "Speciation: Yule Process"
5. Generate xml file
The resulting xml file wil…
-
```
The Laplace prior on coalescent growth rate is given with a default mean of
0.001. The mean should be zero to give equal probability of being positive or
negative.
```
Original issue reported …