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from a private message:
> We are currently benchmarking sourmash as long read taxonomy classifier, meaning mapping them against genomes to assign taxonomy labels. But we struggle a bit on how best …
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A thread to share/discuss example comparisons between implementations.
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**Snakemake version**
7.21.0
**Describe the bug**
Hi,
I have the following rule which contains both Python code and shell commands.
```python
rule run_mags_prodigal:
input:
mag…
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Hi, is it possible to use CoverM to calculate the abundance of specific genes? Would it be affected by the gene length? Thanks!
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**Describe the bug**
Cancer caller hangs in a reproducible manner. The caller is started with 24 threads. Slowly the number of active threads appears to dwindle as I can see the CPU usage go down. …
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Hi,
First, I would like to commend the work of the author and coworkers for this excellent package - it makes the process much more controlled and we have happily been using it.
However, in a curre…
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Hi there,
I'm very excited to try using `decontam`, but I'm not sure it'll work with our data. I'd be grateful for any advice.
I've got the following `phyloseq` object (16 true samples and 5 con…
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As written in the paper that LatentOE-AD also made experiment on MVTEC anomaly segmentation. I am not sure how it's done because there is little mention in the paper and code. Is it possible to releas…
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Dear, Venkatraman!
Can't figure out why FACETs infers genome wide 2:0 state for one of my samples (that is highly unlikely to be the case) and finds 2:1 in another very similar (by logOR baseline)…
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Hi. I have been trying to assemble the genome of a plant species that has a high rate of heterozygosity. The genome size is around 2.8g, and I have about 40X coverage of HiFi reads and HiC.
I tried…