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Just wondering for getting visual reports, do I need to use a specific command?
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**Describe the bug**
Using:
Chris Rorden's dcm2niiX version v1.0.20240202 GCC13.2.1 x86-64…
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I'd like to tap on the hive mind to figure out some potential summary metrics that may reflect quality aspects of DWI data. The idea is to build from the basis being set in #1131.
At this moment, I…
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Our evaluation framework should keep in mind that a lot of intermediate artifacts are common among the different registration frameworks. ANTS FA registration for example will use FA and have to compu…
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Hi @frankyeh,
I was looking at this code with @mattcieslak
https://github.com/frankyeh/DSI-Studio/blob/8b5b13c2e5e05b83d5ebe8a8234cc715e66242a2/libs/dsi/image_model.cpp#L438C1-L482C2
with a …
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1.
```
/software/rocky9/CNN-Diffusion-MRIBrain-Segmentation/tests/../pipeline/dwi_masking.py:40: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/p…
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Take stock of what needs to be pydrafied, and subsequent procedures to follow after pipeline has been uploaded/run on XNAT (i.e., dissemination of pipeline to users/community)
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You have done almost everything correct in `dMRI/thalamic_connectome.sh`!!
Well done!
All the convert.txt and label.txt file pairs are all correct and the sequence of stuff! So this should work.
…
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Hi, I was trying to run pydesigner on a remote machine via an internal job management system, and was wondering about what happens if the "-it --rm" flags are excluded (the current version of the docs…
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**Describe the bug**
dwi-preprocessing pipeline fails with the below errors. The images have earlier been processed with the adni to bids converter.
**To Reproduce**
`clinica run dwi-preprocessin…