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As a developer I want to extract hardcoded gnomAD configuration object storage keys
- [gnomAD genomes variants hail table](https://github.com/opentargets/gentropy/blob/6dfee41a9dd8213151879b37a94d…
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The cnvkit batch command is not working for version 0.9.11.dev0. It is not running and doesnot showing any error
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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Hello,
I try to use SigProfilerAssignment on ~70 samples but I am stuck with an error.
I call the function Analyze.cosmic_fit this way:
```
Analyze.cosmic_fit(samples="../outputs/mutational_sign…
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Hello,
I was following the code to import the latest exomes release [as written here](https://gnomad.broadinstitute.org/help/v4-hts)
```
# Load the v4.0 exomes public release HT
from gnomad.reso…
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Hi, thank you for creating this package.
I am trying to run it on our own exome data. However, I am having a problem getting the haplotype counts by following steps 10 and 11 in the single-cell-pip…
899la updated
7 months ago
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https://batch.hail.populationgenomics.org.au/batches/443781/jobs/1
"Some contigs do not have ploidy priors"
Not sure why this is happening now, when we've had 3 successful runs. Requires investi…
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Hello,
While running the SigProfilerExtractor (version 1.1.21 and 1.1.23) I encounter the following error:
```
Time taken to collect 500 iterations for 1 signatures is 308.93 seconds
Optimizatio…
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Right now we have a flag for "genomes only" and "filtered" but a few other flags would also be useful to add. If flags have multiple flags we may have to figure out how to display multiple flags.
…
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Hi,
I started testing the tool on HG002 using the "benchmark" variants in the supplementary table Supplementary Data [8](https://www.nature.com/articles/s41467-023-42531-9#MOESM11) of the paper htt…